New Arabidopsis DNA 06-Nov-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Nov 7 14:40:13 EST 1999


====================== New DNA Sequences =======================

AC012375    AC012375   105971bp    DNA      HTG      26-OCT-1999
    Arabidopsis thaliana chromosome 1 clone T22C5, WORKING DRAFT SEQUENCE, 7
     unordered pieces.
    HTG; HTGS_PHASE1.

AC012392    AC012392   183147bp    DNA      PLN      27-OCT-1999
    Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
     complete sequence.
    HTG.

AC012393    AC012393    93632bp    DNA      HTG      30-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F10A16, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC012394    AC012394   103056bp    DNA      HTG      30-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F11F8, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC012395    AC012395   106505bp    DNA      HTG      27-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T1B9, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC012396    AC012396    93482bp    DNA      HTG      29-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T9L24, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC012463    AC012463    97153bp    DNA      HTG      28-OCT-1999
    Arabidopsis thaliana chromosome 1 clone T2E6, WORKING DRAFT SEQUENCE, 1
     ordered pieces.
    HTG; HTGS_PHASE2.

AC012523    AC012523      501bp    DNA      PLN      29-OCT-1999
    Genomic Sequence For Arabidopsis thaliana Spanner Clone F19J24,
     Chromosome IV, complete sequence.
    HTG.

AC012561    AC012561   105062bp    DNA      HTG      30-OCT-1999
    Arabidopsis thaliana chromosome I clone F11F12, WORKING DRAFT SEQUENCE, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AC012562    AC012562    93715bp    DNA      HTG      03-NOV-1999
    Arabidopsis thaliana chromosome III clone IGF-F17O14, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC012563    AC012563   126909bp    DNA      HTG      30-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T23K23, WORKING DRAFT
     SEQUENCE, 10 unordered pieces.
    HTG; HTGS_PHASE1.

AC012654    AC012654    98471bp    DNA      HTG      02-NOV-1999
    Arabidopsis thaliana chromosome 1 clone F14O23, WORKING DRAFT SEQUENCE, 1
     ordered pieces.
    HTG; HTGS_PHASE2.

AC012679    AC012679   134647bp    DNA      HTG      03-NOV-1999
    Arabidopsis thaliana chromosome I clone IGF-F25P22, WORKING DRAFT
     SEQUENCE, 14 unordered pieces.
    HTG; HTGS_PHASE1.

AC012680    AC012680    77338bp    DNA      HTG      03-NOV-1999
    Arabidopsis thaliana chromosome I clone TAMU-T11I11, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF021805    AF021805     5792bp    DNA      PLN      04-NOV-1999
    Arabidopsis thaliana eukaryotic translation initiation factor 4B (eIF4B)
     gene, complete cds.
    eIF4B.

AF099735    AF099735     2103bp    mRNA     PLN      01-NOV-1999
    Arabidopsis thaliana auxin response factor 10 (ARF10) mRNA, partial cds.
    ARF10; auxin response factor 10.

AF152096    AF152096     2483bp    DNA      PLN      26-OCT-1999
    Arabidopsis thaliana flowering locus T (FT) gene, complete cds.
    FT; flowering locus T.

AF152907    AF152907      528bp    mRNA     PLN      26-OCT-1999
    Arabidopsis thaliana twin sister of FT (TSF) mRNA, complete cds.
    TSF; twin sister of FT.

AF168390    AF168390     1439bp    mRNA     PLN      28-OCT-1999
    Arabidopsis thaliana root cap 1 (RCP1) mRNA, complete cds.
    RCP1; root cap 1.

AF168391    AF168391     4438bp    DNA      PLN      28-OCT-1999
    Arabidopsis thaliana root cap 1 (RCP1) gene, complete cds.
    RCP1; root cap 1.

AF180390    AF180390     2517bp    mRNA     PLN      04-NOV-1999
    Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete
     cds.
    NPH3; non-phototropic hypocotyl 3.

AF190739    AF190739     2557bp    mRNA     PLN      27-OCT-1999
    Arabidopsis thaliana fructose-6-phosphate
     2-kinase/fructose-2,6-bisphosphatase (F2KP) mRNA, complete cds.
    F2KP; fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase.

AF191741    AF191741      942bp    mRNA     PLN      31-OCT-1999
    Arabidopsis thaliana exonuclease RRP41 (RRP41) mRNA, complete cds.
    RRP41; exonuclease RRP41.

AF192490    AF192490      761bp    mRNA     PLN      03-NOV-1999
    Arabidopsis thaliana cyclophilin (ROC7) mRNA, complete cds.
    ROC7; cyclophilin.

AF193018    AF193018     3466bp    mRNA     PLN      04-NOV-1999
    Arabidopsis thaliana MutS homolog 7 (MSH7) mRNA, complete cds.
    MSH7; MutS homolog 7.

AF199026    AF199026      738bp    mRNA     PLN      04-NOV-1999
    Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete
     cds.
    MYB99; putative transcription factor.

ATAJ2295    AJ002295     2083bp    mRNA     PLN      25-OCT-1999
    Arabidopsis thaliana mRNA for inositol-1,4,5-trisphosphate 5-phosphatase.
    inositol-1,4,5-trisphosphate 5-phosphatase; inositol-1,4,5-trisphosphate
     5-Phosphatase.

ATH249211   AJ249211     1954bp    mRNA     PLN      01-NOV-1999
    Arabidopsis thaliana mRNA for BNH protein (T5A14.2 gene).
    BNH protein; T5A14.2.

ATY15964    Y15964     5554bp    DNA      PLN      22-OCT-1999
    Arabidopsis thaliana RPL21 gene.
    ribosomal protein L21; rpl21 gene; ATCDPK2-like protein; rpl21;
     chloroplast ribosomal protein L21.

==================== Updated DNA Sequences =====================

AC006932    AC006932    89492bp    DNA      PLN      30-OCT-1999
    Genomic sequence for Arabidopsis thaliana BAC T27G7 from chromosome I,
     complete sequence.
    HTG.

AC009328    AC009328   121001bp    DNA      HTG      26-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T28G19, WORKING DRAFT
     SEQUENCE, 16 unordered pieces.
    HTG; HTGS_PHASE1.

AC009398    AC009398    99409bp    DNA      HTG      28-OCT-1999
    Arabidopsis thaliana chromosome 1 clone F20B24, WORKING DRAFT SEQUENCE, 1
     ordered pieces.
    HTG; HTGS_PHASE2.

AC010155    AC010155   104695bp    DNA      HTG      31-OCT-1999
    Arabidopsis thaliana chromosome 1 clone F3M18, WORKING DRAFT SEQUENCE, 2
     ordered pieces.
    HTG; HTGS_PHASE2.

AC010556    AC010556    72347bp    DNA      HTG      02-NOV-1999
    Arabidopsis thaliana chromosome I clone TAMU-T18K17, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC010926    AC010926   220969bp    DNA      HTG      29-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F28P22, WORKING DRAFT
     SEQUENCE, 10 unordered pieces.
    HTG; HTGS_PHASE1.

AC011436    AC011436   111254bp    DNA      HTG      27-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F3L24, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011438    AC011438    89302bp    DNA      HTG      29-OCT-1999
    Arabidopsis thaliana chromosome 1 clone T23G18, WORKING DRAFT SEQUENCE, 3
     ordered pieces.
    HTG; HTGS_PHASE2.

AC011620    AC011620   103323bp    DNA      HTG      02-NOV-1999
    Arabidopsis thaliana chromosome III clone IGF-F18C1, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011621    AC011621    93810bp    DNA      HTG      30-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F23H6, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011624    AC011624    52770bp    DNA      HTG      29-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T18B3, WORKING DRAFT
     SEQUENCE, 15 unordered pieces.
    HTG; HTGS_PHASE1.

AC011663    AC011663   112136bp    DNA      HTG      25-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F1C9, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC011664    AC011664   104609bp    DNA      HTG      02-NOV-1999
    Arabidopsis thaliana chromosome I clone IGF-F1C9, WORKING DRAFT SEQUENCE,
     1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011713    AC011713   109694bp    DNA      PLN      27-OCT-1999
    Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence.
    HTG.

AC011914    AC011914   102793bp    DNA      HTG      03-NOV-1999
    Arabidopsis thaliana chromosome I clone IGF-F14K14, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC012193    AC012193   102000bp    DNA      HTG      28-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T32E8, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC012327    AC012327    94284bp    DNA      HTG      30-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T14A11, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC012328    AC012328   103862bp    DNA      HTG      31-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T17B22, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC012329    AC012329    82407bp    DNA      HTG      28-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T1G12, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC009261  AC009261    79122bp    DNA      PLN      03-NOV-1999
    Arabidopsis thaliana chromosome III BAC T26P13 genomic sequence, complete
     sequence.
    HTG; T26P13.1; T26P13.2; T26P13.3; T26P13.4; T26P13.5; T26P13.6;
     T26P13.7; T26P13.8; T26P13.9; T26P13.10; T26P13.11; T26P13.12;
     T26P13.13.

ATAC010718  AC010718    87684bp    DNA      PLN      30-OCT-1999
    Arabidopsis thaliana chromosome I BAC F28O16 genomic sequence, complete
     sequence.
    HTG; F28O16.1; putative calmodulin; F28O16.2; F28O16.3; F28O16.4;
     F28O16.5; 12-oxophytodienoate reductase (OPR1); F28O16.6;
     12-oxophytodienoate reductase (OPR2); F28O16.7; putative DnaJ protein;
     F28O16.8; F28O16.9; putative translation initiation factor IF-2;
     F28O16.10; F28O16.11; F28O16.12; F28O16.13; thioredoxin-like protein;
     F28O16.14; putative heat shock protein; F28O16.15; F28O16.16; putative
     catechol O-methyltransferase; F28O16.17; nodulin-like protein;
     F28O16.18; F28O16.19; F28O16.20; F28O16.21.

ATAC010796  AC010796    87400bp    DNA      PLN      02-NOV-1999
    Arabidopsis thaliana chromosome I BAC F24J13 genomic sequence, complete
     sequence.
    HTG; F24J13.1; F24J13.2; putative protein kinase; F24J13.3; F24J13.4;
     F24J13.5; F24J13.6; putative ADP-ribosylation factor 1; F24J13.7;
     putative polygalacturonase; F24J13.8; homeotic protein (ATK1); F24J13.9;
     F24J13.10; F24J13.11; F24J13.12; F24J13.13; putative alliinase;
     F24J13.14; F24J13.15; putative alanine aminotransferase; F24J13.16;
     F24J13.17; 60S ribosomal protein L27A; F24J13.18; putative ABC
     transporter; F24J13.19; F24J13.20; F24J13.21.

ATAC010927  AC010927    96232bp    DNA      PLN      30-OCT-1999
    Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete
     sequence.
    HTG; T22K18.1; putative folylpolyglutamate synthetase; T22K18.2;
     T22K18.3; putative RecA protein; T22K18.4; T22K18.5; T22K18.6; T22K18.7;
     T22K18.8; putative ribosomal protein S28; T22K18.9; germin-like protein;
     T22K18.10; T22K18.11; T22K18.12; threonine dehydratase/deaminase;
     T22K18.13; T22K18.14; tRNA-Ala; T22K18.15; putative uridylate kinase;
     T22K18.16; T22K18.17; tRNA-Leu; T22K18.18; T22K18.19; T22K18.20;
     T22K18.21; T22K18.22; T22K18.23; T22K18.24; T22K18.25; putative
     monodehydroascorbate reductase (NADH); T22K18.26.

ATAC011437  AC011437    95310bp    DNA      PLN      02-NOV-1999
    Arabidopsis thaliana chromosome III BAC F7O18 genomic sequence, complete
     sequence.
    HTG; F7O18.1; putative calmodulin-domain protein kinase, 5' partial;
     F7O18.2; F7O18.3; F7O18.4; F7O18.5; putative ethylene receptor; F7O18.6;
     F7O18.7; putative tryptophanyl-tRNA synthetase; F7O18.8; Mutator-like
     transposase; F7O18.9; putative RNA-binding protein; F7O18.10; F7O18.11;
     F7O18.12; F7O18.13; F7O18.14; F7O18.30; F7O18.15; F7O18.16; putative
     protein kinase; F7O18.17; F7O18.18; ankyrin-like protein; F7O18.19;
     F7O18.20; F7O18.21; hevein-like protein precursor; F7O18.22;
     auxin-induced protein; F7O18.23; F7O18.24; F7O18.25; F7O18.26; putative
     40S ribosomal protein; F7O18.27; F7O18.28; putative ribose 5-phosphate
     isomerase; F7O18.29; putative inner mitochondrial membrane protein.

ATAC011560  AC011560   118107bp    DNA      PLN      26-OCT-1999
    Arabidopsis thaliana chromosome III BAC F13M14 genomic sequence, complete
     sequence.
    HTG; F13M14.1; putative galactokinase, 5' partial; F13M14.2; putative DNA
     gyrase subunit A; F13M14.3; F13M14.4; putative ABC transporter ATPase;
     F13M14.5; calmodulin-domain protein kinase CDPK isoform 2; F13M14.6;
     F13M14.7; F13M14.8; F13M14.9; putative diadenosine
     5',5'''-P1,P4-tetraphosphate hydrolase; F13M14.10; putative 40S
     ribosomal protein S17; F13M14.11; putative amino acid transporter;
     F13M14.12; F13M14.13; F13M14.14; F13M14.15; putative cytochrome P450;
     F13M14.16; F13M14.17; putative myotubularin; F13M14.18; putative
     3-phosphoinositide-dependent protein kinase-1; F13M14.19; F13M14.20;
     class 2 non-symbiotic hemoglobin; F13M14.21; F13M14.22; F13M14.23;
     F13M14.24; F13M14.25; F13M14.26; F13M14.27; putative glucose
     acyltransferase; F13M14.28; F13M14.29; F13M14.30; F13M14.31; tRNA-Thr;
     F13M14.32; putative serine carboxypeptidase precursor; F13M14.33;
     F13M14.34.

ATAC011698  AC011698    63654bp    DNA      PLN      03-NOV-1999
    Arabidopsis thaliana chromosome III BAC T11I18 genomic sequence, complete
     sequence.
    HTG; T11I18.1; putative adenylylsulfate kinase, 3' partial; T11I18.2;
     putative glutamate dehydrogenase; T11I18.3; T11I18.4; T11I18.5; putative
     casein kinase; T11I18.6; T11I18.7; putative T-complex protein 1, theta
     subunit (TCP-1-Theta); T11I18.8; T11I18.9; putative short-chain type
     dehydrogenase/reductase; T11I18.10; T11I18.11; T11I18.12; putative
     beta-1,3-glucanase; T11I18.13; T11I18.14; transfactor-like; T11I18.15;
     T11I18.16; putative pyruvate kinase; T11I18.17; NAM-like protein (no
     apical meristem); T11I18.18.

=========== Updated Sequence Features/Annotations  =============

AF093604    AF093604     2024bp    mRNA     PLN      01-NOV-1999
    Arabidopsis thaliana apyrase (Atapy1) mRNA, complete cds.
    Atapy1; apyrase.

ATH5687     AJ005687     3641bp    DNA      PLN      26-OCT-1999
    Arabidopsis thaliana cda1 gene.
    cda1 gene; cytidine deaminase; cda1.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/





More information about the Arab-gen mailing list