New Arabidopsis DNA 09-Oct-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Oct 11 10:39:46 EST 1999


====================== New DNA Sequences =======================

AB015859    AB015859      588bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana psbS mRNA for photosystem II 22 kDa protein, partial
     cds.
    photosystem II 22 kDa protein; psbS.

AB015860    AB015860      295bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana psaE mRNA for photosystem I subunit PSI-E, partial
     cds.
    photosystem I subunit PSI-E; psaE.

AB015861    AB015861      512bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana psaL mRNA for photosystem I subunit PSI-L, partial
     cds.
    photosystem I subunit PSI-L; psaL.

AB015862    AB015862      240bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana mRNA for phytochrome-regulated gene product, partial
     sequence.

AB030730    AB030730     1701bp    DNA      PLN      05-OCT-1999
    Arabidopsis thaliana AZF2 gene for Cys2/His2-type zinc finger protein 2,
     complete cds.
    Cys2/His2-type zinc finger protein 2; AZF2.

AB030731    AB030731      735bp    DNA      PLN      05-OCT-1999
    Arabidopsis thaliana AZF1 gene for Cys2/His2-type zinc finger protein 1,
     partial cds.
    Cys2/His2-type zinc finger protein 1; AZF1.

AB030732    AB030732      579bp    DNA      PLN      05-OCT-1999
    Arabidopsis thaliana AZF3 gene for Cys2/His2-type zinc finger protein 3,
     partial cds.
    Cys2/His2-type zinc finger protein 3; AZF3.

AB032864    AB032864     1507bp    mRNA     PLN      05-OCT-1999
    Arabidopsis thaliana Atmst1 mRNA for mercaptopyruvate sulfurtransferase,
     complete cds.
    mercaptopyruvate sulfurtransferase; Atmst1.

AB032865    AB032865     1296bp    mRNA     PLN      05-OCT-1999
    Arabidopsis thaliana Atmst2 mRNA for mercaptopyruvate sulfurtransferase,
     complete cds.
    mercaptopyruvate sulfurtransferase; Atmst2.

AC011000    AC011000    78418bp    DNA      HTG      29-SEP-1999
    Arabidopsis thaliana chromosome 1 clone F16P17, WORKING DRAFT SEQUENCE,
     15 unordered pieces.
    HTG; HTGS_PHASE1.

AC011001    AC011001    85095bp    DNA      HTG      29-SEP-1999
    Arabidopsis thaliana chromosome I clone F4H5, WORKING DRAFT SEQUENCE, 5
     unordered pieces.
    HTG; HTGS_PHASE1.

AC011020    AC011020    96381bp    DNA      HTG      30-SEP-1999
    Arabidopsis thaliana chromosome I clone IGF-F12B7, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC011436    AC011436   108565bp    DNA      HTG      06-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F3L24, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC011437    AC011437   102004bp    DNA      HTG      08-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F7O18, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC011438    AC011438    85205bp    DNA      HTG      07-OCT-1999
    Arabidopsis thaliana chromosome 1 clone T23G18, WORKING DRAFT SEQUENCE,
     10 unordered pieces.
    HTG; HTGS_PHASE1.

AC011560    AC011560   121072bp    DNA      HTG      07-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F13M14, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC011620    AC011620   103437bp    DNA      HTG      08-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F18C1, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC011621    AC011621    95343bp    DNA      HTG      08-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F23H6, WORKING DRAFT
     SEQUENCE, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC011622    AC011622    96857bp    DNA      HTG      08-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F24D7, WORKING DRAFT
     SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC011623    AC011623    88792bp    DNA      HTG      08-OCT-1999
    Arabidopsis thaliana chromosome III clone IGF-F24P17, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC011624    AC011624    92404bp    DNA      HTG      08-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T18B3, WORKING DRAFT
     SEQUENCE, 13 unordered pieces.
    HTG; HTGS_PHASE1.

AF076686    AF076686     5138bp    DNA      PLN      01-OCT-1999
    Arabidopsis thaliana GIGANTEA (GI) gene, complete cds.
    GI; GIGANTEA.

AF093604    AF093604     2024bp    mRNA     PLN      01-OCT-1999
    Arabidopsis thaliana apyrase (apy1) mRNA, complete cds.
    apy1; apyrase.

AF101048    AF101048      126bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana clone AtMYBCP66 R2R3-MYB protein mRNA, partial cds.
    R2R3-MYB protein.

AF101049    AF101049      126bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana clone AtMYBCT70 R2R3-MYB protein mRNA, partial cds.
    R2R3-MYB protein.

AF101050    AF101050      126bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana clone AtMYBCU15 R2R3-MYB protein mRNA, partial cds.
    R2R3-MYB protein.

AF105064    AF105064     4001bp    mRNA     PLN      01-OCT-1999
    Arabidopsis thaliana GIGANTEA (GI) mRNA, complete cds.
    GI; GIGANTEA.

AF109376    AF109376     1502bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana tRNA isopentenyl transferase mRNA, complete cds.
    tRNA isopentenyl transferase.

AF156783    AF156783     1953bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana apyrase mRNA, complete cds.
    apyrase.

AF160500    AF160500     3173bp    mRNA     PLN      06-OCT-1999
    Arabidopsis thaliana repair endonuclease (UVH1) mRNA, complete cds.
    UVH1; repair endonuclease.

AF172727    AF172727     1567bp    mRNA     PLN      01-OCT-1999
    Arabidopsis thaliana allene oxide synthase mRNA, complete cds.
    allene oxide synthase.

AF177989    AF177989      870bp    mRNA     PLN      06-OCT-1999
    Arabidopsis thaliana alpha-soluble NSF attachment protein (aSNAP) mRNA,
     complete cds.
    aSNAP; alpha-soluble NSF attachment protein.

AF177990    AF177990      876bp    mRNA     PLN      06-OCT-1999
    Arabidopsis thaliana gamma-soluble NSF attachment protein (gSNAP) mRNA,
     complete cds.
    gSNAP; gamma-soluble NSF attachment protein.

AF178687    AF178687     2647bp    mRNA     PLN      05-OCT-1999
    Arabidopsis thaliana unknown mRNA sequence.

AF183576    AF183576     2505bp    DNA      PLN      04-OCT-1999
    Arabidopsis thaliana actin depolymerizing factor 6 (ADF6) gene, complete
     cds.
    ADF6; actin depolymerizing factor 6.

AF183932    AF183932     2931bp    mRNA     PLN      06-OCT-1999
    Arabidopsis thaliana ionotropic glutamate receptor homolog (GLR4) mRNA,
     complete cds.
    GLR4; ionotropic glutamate receptor homolog.

AF184093    AF184093     3140bp    DNA      PLN      06-OCT-1999
    Arabidopsis thaliana spermine synthase (ACL5) gene, complete cds.
    ACL5; spermine synthase.

AF184094    AF184094     1180bp    mRNA     PLN      06-OCT-1999
    Arabidopsis thaliana spermine synthase (ACL5) mRNA, complete cds.
    ACL5; spermine synthase.

AF187871    AF187871     1167bp    mRNA     PLN      01-OCT-1999
    Arabidopsis thaliana fibrillarin homolog (Fbr1) mRNA, complete cds.
    Fbr1; fibrillarin homolog.

AF188334    AF188334      850bp    mRNA     PLN      06-OCT-1999
    Arabidopsis thaliana Toll/interleukin-1 receptor-like protein (TIR) mRNA,
     complete cds.
    TIR; Toll/interleukin-1 receptor-like protein.

ATH011976   AJ011976     1368bp    mRNA     PLN      28-SEP-1999
    Arabidopsis thaliana mRNA for cysteine synthase.
    cysteine synthase; oas4 gene; oas4.

ATH012559   AJ012559     1224bp    DNA      PLN      30-SEP-1999
    Arabidopsis thaliana chloroplast rpoC1 gene, exons 1 and 2, partial.
    beta' subunit; RNA polymerase; rpoC1 gene; rpoC1, beta' subunit; rpoC1,
     beta'subunit.

ATH012564   AJ012564      467bp    DNA      PLN      30-SEP-1999
    Arabidopsis thaliana chloroplast rpoC1 gene, partial.
    beta' subunit; RNA polymerase; rpoC1 gene; rpoC1, beta' subunit.

ATH132096   AJ132096     2951bp    mRNA     PLN      30-SEP-1999
    Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 12.
    spl12 gene; squamosa promoter binding protein-like 12; spl12.

ATH132097   AJ132097     3711bp    DNA      PLN      30-SEP-1999
    Arabidopsis thaliana spl12 gene, exons 1-10.
    spl12 gene; squamosa promoter binding protein-like 12; spl12.

ATH242957   AJ242957     2864bp    mRNA     PLN      30-SEP-1999
    Arabidopsis thaliana partial mRNA for SPL1-Related2 protein (SPL1R2
     gene).
    SPL1-Related2 protein; SPL1R2 gene; SPL1R2.

ATH242958   AJ242958     2392bp    mRNA     PLN      30-SEP-1999
    Arabidopsis thaliana partial mRNA for SPL1-Related3 protein (SPL1R3
     gene).
    SPL1-Related3; SPL1R3 gene; SPL1R3; SPL1-Related3 protein.

ATH242960   AJ242960      850bp    mRNA     PLN      30-SEP-1999
    Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 5,
     (SPL5 gene).
    spl5 gene; Squamosa promoter binding protein like 5; SPL5; Squamosa
     promoter binding protein-like 5.

ATH243094   AJ243094     2860bp    DNA      PLN      30-SEP-1999
    Arabidopsis thaliana SPL1R2 gene for Spl1-Related2 protein, exons 1 to 8.
    SPL1-Related2 protein; SPL1R2 gene; SPL1R2; Spl1-Related2 protein.

ATH249794   AJ249794     2765bp    mRNA     PLN      28-SEP-1999
    Arabidopsis thaliana mRNA for lipoxygenase (lox3 gene).
    lipoxygenase; Lox3 gene; lox3.

==================== Updated DNA Sequences =====================

AC007887    AC007887   159434bp    DNA      PLN      04-OCT-1999
    Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I,
     complete sequence.
    HTG.

AC009978    AC009978    97540bp    DNA      HTG      06-OCT-1999
    Arabidopsis thaliana chromosome 1 clone T23E18, WORKING DRAFT SEQUENCE, 1
     ordered pieces.
    HTG; HTGS_PHASE2.

AC010676    AC010676    62813bp    DNA      HTG      06-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T22N4, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC010718    AC010718   162775bp    DNA      HTG      05-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F28O16, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC010796    AC010796    91160bp    DNA      HTG      08-OCT-1999
    Arabidopsis thaliana chromosome I clone IGF-F24J13, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC010852    AC010852    91057bp    DNA      HTG      05-OCT-1999
    Arabidopsis thaliana chromosome I clone TAMU-T12P18, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC010870    AC010870    86333bp    DNA      HTG      05-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T13O15, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC010871    AC010871    83469bp    DNA      HTG      06-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T16O11, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC010927    AC010927    98064bp    DNA      HTG      07-OCT-1999
    Arabidopsis thaliana chromosome III clone TAMU-T22K18, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF045286    AF045286      936bp    DNA      PLN      08-OCT-1999
    Arabidopsis thaliana
     GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER1) gene,
     partial cds.
    GER1; GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase.

ATAC008153  AC008153   117296bp    DNA      PLN      02-OCT-1999
    Arabidopsis thaliana chromosome III BAC F24K9 genomic sequence, complete
     sequence.
    HTG; F24K9.1; putative UDP-glucuronosyltransferase, 5' partial; F24K9.2;
     F24K9.3; F24K9.4; F24K9.5; F24K9.6; tRNA-Val; F24K9.7; putative
     eukaryotic translation initiation factor 3 subunit; F24K9.8; protein
     phosphatase 2C (PP2C); F24K9.9; F24K9.10; F24K9.11; putative
     transcription factor; F24K9.12; putative cell division related protein;
     F24K9.13; F24K9.14; F24K9.15; F24K9.16; putative rac GTPase activating
     protein; F24K9.17; putative small nuclear ribonucleoprotein polypeptide
     G; F24K9.18; tRNA-Pro; F24K9.19; putative 40S ribosomal protein s14;
     F24K9.20; putative cyclin; F24K9.21; F24K9.29; spindly (gibberellin
     signal transduction protein); F24K9.22; F24K9.23; F24K9.24; F24K9.25;
     putative DNA binding protein; F24K9.26; F24K9.27; F24K9.28; putative
     2-cys peroxiredoxin BAS1 precursor (thiol-specific antioxidant protein).

ATAC009325  AC009325   105543bp    DNA      PLN      08-OCT-1999
    Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete
     sequence.
    HTG; F4P13.1; F4P13.2; homeobox-leucine zipper protein HAT5 (HD-ZIP
     protein 5) (HD-ZIP protein ATHB-1); F4P13.3; putative thylakoid lumen
     rotamase; F4P13.4; putative protein kinase; F4P13.5; carbonic anhydrase,
     chloroplast precursor; F4P13.6; F4P13.7; F4P13.8; putative transcription
     factor; F4P13.9; RNA helicase, DRH1; F4P13.10; putative
     phosphate/phosphoenolpyruvate translocator; F4P13.11; F4P13.12; putative
     oleosin; F4P13.34; F4P13.13; F4P13.14; F4P13.15; putative cell division
     control protein; F4P13.16; F4P13.17; F4P13.18; F4P13.19; F4P13.20;
     F4P13.21; F4P13.22; F4P13.23; F4P13.24; F4P13.25; tRNA-Pro; F4P13.26;
     F4P13.27; F4P13.28; F4P13.29; F4P13.30; F4P13.31; putative amino acid
     permease; F4P13.32; F4P13.33.

ATAC009465  AC009465    93234bp    DNA      PLN      29-SEP-1999
    Arabidopsis thaliana chromosome III BAC T9J14 genomic sequence, complete
     sequence.
    HTG; T9J14.1; T9J14.2; putative sodium proton exchanger; T9J14.3; acyl
     carrier protein 1 precursor (ACP); T9J14.4; T9J14.5; T9J14.6; T9J14.7;
     T9J14.8; T9J14.9; T9J14.10; T9J14.11; putative cysteine synthase;
     T9J14.12; T9J14.13; putative ribosomal protein s19 or s24; T9J14.14;
     putative mitogen activated protein kinase kinase; T9J14.15; T9J14.16;
     T9J14.18; T9J14.17; DNA-damage-repair/toleration protein DRT102;
     putative zeta-carotene desaturase precursor; T9J14.19; T9J14.20;
     T9J14.21; putative 40S ribosomal protein S3A (S phase specific);
     T9J14.22; T9J14.23; T9J14.24; putative kinase; T9J14.25; putative inner
     mitochondrial membrane protein; T9J14.26; putative ribose 5-phosphate
     isomerase; T9J14.27.

ATAC009540  AC009540   101410bp    DNA      PLN      02-OCT-1999
    Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete
     sequence.
    HTG; F20H23.1; F20H23.2; F20H23.3; putative GAR1 protein; F20H23.4;
     putative glutamate dehydrogenase; F20H23.5; putative adenylylsulfate
     kinase; F20H23.6; F20H23.7; F20H23.8; F20H23.9; F20H23.10; F20H23.11;
     putative auxin-induced protein; F20H23.12; tRNA-Thr; F20H23.13;
     F20H23.14; F20H23.15; F20H23.16; F20H23.17; putative auxin-independent
     growth promoter protein; F20H23.28; s-syntaxin-like protein; F20H23.18;
     F20H23.19; putative methionine synthase; F20H23.20; F20H23.21;
     F20H23.22; F20H23.23; F20H23.24; F20H23.25; putative cationic amino acid
     transporter; F20H23.26; putative polynucleotide phosphorylase;
     F20H23.27.

ATAC009991  AC009991   101284bp    DNA      PLN      08-OCT-1999
    Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete
     sequence.
    HTG; F9F8.1; F9F8.2; putative nucleic acid binding protein; F9F8.3;
     putative leucoanthocyanidin dioxygenase; F9F8.4; omega-3 fatty acid
     desaturase, chloroplast precursor; F9F8.5; F9F8.6; putative clathrin
     heavy chain; F9F8.7; ribosomal protein L41; F9F8.8; F9F8.9; F9F8.10;
     F9F8.11; putative disease resistance protein; F9F8.12; F9F8.13; putative
     ferritin subunit precursor; F9F8.14; F9F8.15; F9F8.16; DREB2B
     transcription factor; F9F8.17; F9F8.18; F9F8.19; F9F8.20; F9F8.21;
     F9F8.22; F9F8.23; putative 60S ribosomal protein L37a; F9F8.24; F9F8.25;
     F9F8.26; putative [Mn] superoxide dismutase.

ATH012459   AJ012459      564bp    mRNA     PLN      30-SEP-1999
    Arabidopsis thaliana mRNA for AGP6 protein.
    agp6 gene; AGP6 protein; agp6.

=========== Updated Sequence Features/Annotations  =============

AB003590    AB003590     5045bp    DNA      PLN      02-OCT-1999
    Arabidopsis thaliana DNA for sulfate transporter, complete cds.
    sulfate transporter.

AB003591    AB003591     2406bp    mRNA     PLN      02-OCT-1999
    Arabidopsis thaliana mRNA for sulfate transporter, complete cds.
    sulfate transporter.

AB005903    AB005903      622bp    mRNA     PLN      05-OCT-1999
    Arabidopsis thaliana AtPH1 mRNA, complete cds.
    AtPH1.

AC010924    AC010924    92857bp    DNA      HTG      30-SEP-1999
    Arabidopsis thaliana chromosome 1 clone T24D18, WORKING DRAFT SEQUENCE, 2
     ordered pieces.
    HTG; HTGS_PHASE2.

AF022082    AF022082     1799bp    mRNA     PLN      30-SEP-1999
    Arabidopsis thaliana sulfolipid biosynthesis protein (SQD1) mRNA,
     complete cds.
    SQD1; sulfolipid biosynthesis protein.

AF039371    AF039371     9643bp    DNA      PLN      01-OCT-1999
    Arabidopsis thaliana ecotype Ler chromomethylase (CMT1) gene, complete
     cds.
    CMT1; chromomethylase; polyprotein.

AF039372    AF039372     9643bp    DNA      PLN      01-OCT-1999
    Arabidopsis thaliana ecotype No-0 chromomethylase (CMT1) gene, complete
     cds.
    chromomethylase; polyprotein.

AF039373    AF039373     9642bp    DNA      PLN      01-OCT-1999
    Arabidopsis thaliana ecotype RLD chromomethylase (CMT1) gene, complete
     cds.
    CMT1; chromomethylase; polyprotein.

AF146794    AF146794     1133bp    DNA      PLN      29-SEP-1999
    Arabidopsis thaliana NOZZLE (NZZ) gene, complete cds.
    NZZ; NOZZLE.

AF177200    AF177200     3273bp    DNA      PLN      08-OCT-1999
    Arabidopsis thaliana chlorophyll a oxygenase (CAO) gene, complete cds.
    CAO; chlorophyll a oxygenase.

ATAJ0057    AJ000057     1525bp    mRNA     PLN      30-SEP-1999
    Arabidopsis thaliana mRNA for a serine/threonine protein phosphatase.
    serine/threonine protein phosphatase; PP7.

ATH131180   AJ131180     1689bp    DNA      PLN      06-OCT-1999
    Arabidopsis thaliana rps14 gene.
    ribosomal protein S14; rps14 gene; rps14; putative.

ATU43397    U43397     2111bp    mRNA     PLN      04-OCT-1999
    Arabidopsis thaliana cryptochrome 2 apoprotein (CRY2) mRNA, complete cds.
    CRY2; cryptochrome 2 apoprotein.

ATZ86093    Z86093     1450bp    mRNA     PLN      30-SEP-1999
    A.thaliana mRNA for b-Zip DNA binding protein.
    bZIP; DNA binding protein; b-Zip DNA binding protein.

ATZ86094    Z86094     1010bp    mRNA     PLN      30-SEP-1999
    A.thaliana mRNA for plastid protein.
    plastid protein.

ATZ86095    Z86095     1018bp    mRNA     PLN      30-SEP-1999
    A.thaliana mRNA for peptidyl-prolyl cis-trans isomerase.
    peptidyl-prolyl cis-trans isomerase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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