New Arabidopsis DNA 09-Oct-1999
AtDB Project
arabidopsis-seq at genome.stanford.edu
Mon Oct 11 10:39:46 EST 1999
====================== New DNA Sequences =======================
AB015859 AB015859 588bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana psbS mRNA for photosystem II 22 kDa protein, partial
cds.
photosystem II 22 kDa protein; psbS.
AB015860 AB015860 295bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana psaE mRNA for photosystem I subunit PSI-E, partial
cds.
photosystem I subunit PSI-E; psaE.
AB015861 AB015861 512bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana psaL mRNA for photosystem I subunit PSI-L, partial
cds.
photosystem I subunit PSI-L; psaL.
AB015862 AB015862 240bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana mRNA for phytochrome-regulated gene product, partial
sequence.
AB030730 AB030730 1701bp DNA PLN 05-OCT-1999
Arabidopsis thaliana AZF2 gene for Cys2/His2-type zinc finger protein 2,
complete cds.
Cys2/His2-type zinc finger protein 2; AZF2.
AB030731 AB030731 735bp DNA PLN 05-OCT-1999
Arabidopsis thaliana AZF1 gene for Cys2/His2-type zinc finger protein 1,
partial cds.
Cys2/His2-type zinc finger protein 1; AZF1.
AB030732 AB030732 579bp DNA PLN 05-OCT-1999
Arabidopsis thaliana AZF3 gene for Cys2/His2-type zinc finger protein 3,
partial cds.
Cys2/His2-type zinc finger protein 3; AZF3.
AB032864 AB032864 1507bp mRNA PLN 05-OCT-1999
Arabidopsis thaliana Atmst1 mRNA for mercaptopyruvate sulfurtransferase,
complete cds.
mercaptopyruvate sulfurtransferase; Atmst1.
AB032865 AB032865 1296bp mRNA PLN 05-OCT-1999
Arabidopsis thaliana Atmst2 mRNA for mercaptopyruvate sulfurtransferase,
complete cds.
mercaptopyruvate sulfurtransferase; Atmst2.
AC011000 AC011000 78418bp DNA HTG 29-SEP-1999
Arabidopsis thaliana chromosome 1 clone F16P17, WORKING DRAFT SEQUENCE,
15 unordered pieces.
HTG; HTGS_PHASE1.
AC011001 AC011001 85095bp DNA HTG 29-SEP-1999
Arabidopsis thaliana chromosome I clone F4H5, WORKING DRAFT SEQUENCE, 5
unordered pieces.
HTG; HTGS_PHASE1.
AC011020 AC011020 96381bp DNA HTG 30-SEP-1999
Arabidopsis thaliana chromosome I clone IGF-F12B7, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC011436 AC011436 108565bp DNA HTG 06-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F3L24, WORKING DRAFT
SEQUENCE, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC011437 AC011437 102004bp DNA HTG 08-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F7O18, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC011438 AC011438 85205bp DNA HTG 07-OCT-1999
Arabidopsis thaliana chromosome 1 clone T23G18, WORKING DRAFT SEQUENCE,
10 unordered pieces.
HTG; HTGS_PHASE1.
AC011560 AC011560 121072bp DNA HTG 07-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F13M14, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC011620 AC011620 103437bp DNA HTG 08-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F18C1, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC011621 AC011621 95343bp DNA HTG 08-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F23H6, WORKING DRAFT
SEQUENCE, 7 unordered pieces.
HTG; HTGS_PHASE1.
AC011622 AC011622 96857bp DNA HTG 08-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F24D7, WORKING DRAFT
SEQUENCE, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC011623 AC011623 88792bp DNA HTG 08-OCT-1999
Arabidopsis thaliana chromosome III clone IGF-F24P17, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC011624 AC011624 92404bp DNA HTG 08-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T18B3, WORKING DRAFT
SEQUENCE, 13 unordered pieces.
HTG; HTGS_PHASE1.
AF076686 AF076686 5138bp DNA PLN 01-OCT-1999
Arabidopsis thaliana GIGANTEA (GI) gene, complete cds.
GI; GIGANTEA.
AF093604 AF093604 2024bp mRNA PLN 01-OCT-1999
Arabidopsis thaliana apyrase (apy1) mRNA, complete cds.
apy1; apyrase.
AF101048 AF101048 126bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana clone AtMYBCP66 R2R3-MYB protein mRNA, partial cds.
R2R3-MYB protein.
AF101049 AF101049 126bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana clone AtMYBCT70 R2R3-MYB protein mRNA, partial cds.
R2R3-MYB protein.
AF101050 AF101050 126bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana clone AtMYBCU15 R2R3-MYB protein mRNA, partial cds.
R2R3-MYB protein.
AF105064 AF105064 4001bp mRNA PLN 01-OCT-1999
Arabidopsis thaliana GIGANTEA (GI) mRNA, complete cds.
GI; GIGANTEA.
AF109376 AF109376 1502bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana tRNA isopentenyl transferase mRNA, complete cds.
tRNA isopentenyl transferase.
AF156783 AF156783 1953bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana apyrase mRNA, complete cds.
apyrase.
AF160500 AF160500 3173bp mRNA PLN 06-OCT-1999
Arabidopsis thaliana repair endonuclease (UVH1) mRNA, complete cds.
UVH1; repair endonuclease.
AF172727 AF172727 1567bp mRNA PLN 01-OCT-1999
Arabidopsis thaliana allene oxide synthase mRNA, complete cds.
allene oxide synthase.
AF177989 AF177989 870bp mRNA PLN 06-OCT-1999
Arabidopsis thaliana alpha-soluble NSF attachment protein (aSNAP) mRNA,
complete cds.
aSNAP; alpha-soluble NSF attachment protein.
AF177990 AF177990 876bp mRNA PLN 06-OCT-1999
Arabidopsis thaliana gamma-soluble NSF attachment protein (gSNAP) mRNA,
complete cds.
gSNAP; gamma-soluble NSF attachment protein.
AF178687 AF178687 2647bp mRNA PLN 05-OCT-1999
Arabidopsis thaliana unknown mRNA sequence.
AF183576 AF183576 2505bp DNA PLN 04-OCT-1999
Arabidopsis thaliana actin depolymerizing factor 6 (ADF6) gene, complete
cds.
ADF6; actin depolymerizing factor 6.
AF183932 AF183932 2931bp mRNA PLN 06-OCT-1999
Arabidopsis thaliana ionotropic glutamate receptor homolog (GLR4) mRNA,
complete cds.
GLR4; ionotropic glutamate receptor homolog.
AF184093 AF184093 3140bp DNA PLN 06-OCT-1999
Arabidopsis thaliana spermine synthase (ACL5) gene, complete cds.
ACL5; spermine synthase.
AF184094 AF184094 1180bp mRNA PLN 06-OCT-1999
Arabidopsis thaliana spermine synthase (ACL5) mRNA, complete cds.
ACL5; spermine synthase.
AF187871 AF187871 1167bp mRNA PLN 01-OCT-1999
Arabidopsis thaliana fibrillarin homolog (Fbr1) mRNA, complete cds.
Fbr1; fibrillarin homolog.
AF188334 AF188334 850bp mRNA PLN 06-OCT-1999
Arabidopsis thaliana Toll/interleukin-1 receptor-like protein (TIR) mRNA,
complete cds.
TIR; Toll/interleukin-1 receptor-like protein.
ATH011976 AJ011976 1368bp mRNA PLN 28-SEP-1999
Arabidopsis thaliana mRNA for cysteine synthase.
cysteine synthase; oas4 gene; oas4.
ATH012559 AJ012559 1224bp DNA PLN 30-SEP-1999
Arabidopsis thaliana chloroplast rpoC1 gene, exons 1 and 2, partial.
beta' subunit; RNA polymerase; rpoC1 gene; rpoC1, beta' subunit; rpoC1,
beta'subunit.
ATH012564 AJ012564 467bp DNA PLN 30-SEP-1999
Arabidopsis thaliana chloroplast rpoC1 gene, partial.
beta' subunit; RNA polymerase; rpoC1 gene; rpoC1, beta' subunit.
ATH132096 AJ132096 2951bp mRNA PLN 30-SEP-1999
Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 12.
spl12 gene; squamosa promoter binding protein-like 12; spl12.
ATH132097 AJ132097 3711bp DNA PLN 30-SEP-1999
Arabidopsis thaliana spl12 gene, exons 1-10.
spl12 gene; squamosa promoter binding protein-like 12; spl12.
ATH242957 AJ242957 2864bp mRNA PLN 30-SEP-1999
Arabidopsis thaliana partial mRNA for SPL1-Related2 protein (SPL1R2
gene).
SPL1-Related2 protein; SPL1R2 gene; SPL1R2.
ATH242958 AJ242958 2392bp mRNA PLN 30-SEP-1999
Arabidopsis thaliana partial mRNA for SPL1-Related3 protein (SPL1R3
gene).
SPL1-Related3; SPL1R3 gene; SPL1R3; SPL1-Related3 protein.
ATH242960 AJ242960 850bp mRNA PLN 30-SEP-1999
Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 5,
(SPL5 gene).
spl5 gene; Squamosa promoter binding protein like 5; SPL5; Squamosa
promoter binding protein-like 5.
ATH243094 AJ243094 2860bp DNA PLN 30-SEP-1999
Arabidopsis thaliana SPL1R2 gene for Spl1-Related2 protein, exons 1 to 8.
SPL1-Related2 protein; SPL1R2 gene; SPL1R2; Spl1-Related2 protein.
ATH249794 AJ249794 2765bp mRNA PLN 28-SEP-1999
Arabidopsis thaliana mRNA for lipoxygenase (lox3 gene).
lipoxygenase; Lox3 gene; lox3.
==================== Updated DNA Sequences =====================
AC007887 AC007887 159434bp DNA PLN 04-OCT-1999
Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I,
complete sequence.
HTG.
AC009978 AC009978 97540bp DNA HTG 06-OCT-1999
Arabidopsis thaliana chromosome 1 clone T23E18, WORKING DRAFT SEQUENCE, 1
ordered pieces.
HTG; HTGS_PHASE2.
AC010676 AC010676 62813bp DNA HTG 06-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T22N4, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC010718 AC010718 162775bp DNA HTG 05-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F28O16, WORKING DRAFT
SEQUENCE, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC010796 AC010796 91160bp DNA HTG 08-OCT-1999
Arabidopsis thaliana chromosome I clone IGF-F24J13, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC010852 AC010852 91057bp DNA HTG 05-OCT-1999
Arabidopsis thaliana chromosome I clone TAMU-T12P18, WORKING DRAFT
SEQUENCE, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC010870 AC010870 86333bp DNA HTG 05-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T13O15, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC010871 AC010871 83469bp DNA HTG 06-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T16O11, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC010927 AC010927 98064bp DNA HTG 07-OCT-1999
Arabidopsis thaliana chromosome III clone TAMU-T22K18, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AF045286 AF045286 936bp DNA PLN 08-OCT-1999
Arabidopsis thaliana
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER1) gene,
partial cds.
GER1; GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase.
ATAC008153 AC008153 117296bp DNA PLN 02-OCT-1999
Arabidopsis thaliana chromosome III BAC F24K9 genomic sequence, complete
sequence.
HTG; F24K9.1; putative UDP-glucuronosyltransferase, 5' partial; F24K9.2;
F24K9.3; F24K9.4; F24K9.5; F24K9.6; tRNA-Val; F24K9.7; putative
eukaryotic translation initiation factor 3 subunit; F24K9.8; protein
phosphatase 2C (PP2C); F24K9.9; F24K9.10; F24K9.11; putative
transcription factor; F24K9.12; putative cell division related protein;
F24K9.13; F24K9.14; F24K9.15; F24K9.16; putative rac GTPase activating
protein; F24K9.17; putative small nuclear ribonucleoprotein polypeptide
G; F24K9.18; tRNA-Pro; F24K9.19; putative 40S ribosomal protein s14;
F24K9.20; putative cyclin; F24K9.21; F24K9.29; spindly (gibberellin
signal transduction protein); F24K9.22; F24K9.23; F24K9.24; F24K9.25;
putative DNA binding protein; F24K9.26; F24K9.27; F24K9.28; putative
2-cys peroxiredoxin BAS1 precursor (thiol-specific antioxidant protein).
ATAC009325 AC009325 105543bp DNA PLN 08-OCT-1999
Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete
sequence.
HTG; F4P13.1; F4P13.2; homeobox-leucine zipper protein HAT5 (HD-ZIP
protein 5) (HD-ZIP protein ATHB-1); F4P13.3; putative thylakoid lumen
rotamase; F4P13.4; putative protein kinase; F4P13.5; carbonic anhydrase,
chloroplast precursor; F4P13.6; F4P13.7; F4P13.8; putative transcription
factor; F4P13.9; RNA helicase, DRH1; F4P13.10; putative
phosphate/phosphoenolpyruvate translocator; F4P13.11; F4P13.12; putative
oleosin; F4P13.34; F4P13.13; F4P13.14; F4P13.15; putative cell division
control protein; F4P13.16; F4P13.17; F4P13.18; F4P13.19; F4P13.20;
F4P13.21; F4P13.22; F4P13.23; F4P13.24; F4P13.25; tRNA-Pro; F4P13.26;
F4P13.27; F4P13.28; F4P13.29; F4P13.30; F4P13.31; putative amino acid
permease; F4P13.32; F4P13.33.
ATAC009465 AC009465 93234bp DNA PLN 29-SEP-1999
Arabidopsis thaliana chromosome III BAC T9J14 genomic sequence, complete
sequence.
HTG; T9J14.1; T9J14.2; putative sodium proton exchanger; T9J14.3; acyl
carrier protein 1 precursor (ACP); T9J14.4; T9J14.5; T9J14.6; T9J14.7;
T9J14.8; T9J14.9; T9J14.10; T9J14.11; putative cysteine synthase;
T9J14.12; T9J14.13; putative ribosomal protein s19 or s24; T9J14.14;
putative mitogen activated protein kinase kinase; T9J14.15; T9J14.16;
T9J14.18; T9J14.17; DNA-damage-repair/toleration protein DRT102;
putative zeta-carotene desaturase precursor; T9J14.19; T9J14.20;
T9J14.21; putative 40S ribosomal protein S3A (S phase specific);
T9J14.22; T9J14.23; T9J14.24; putative kinase; T9J14.25; putative inner
mitochondrial membrane protein; T9J14.26; putative ribose 5-phosphate
isomerase; T9J14.27.
ATAC009540 AC009540 101410bp DNA PLN 02-OCT-1999
Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete
sequence.
HTG; F20H23.1; F20H23.2; F20H23.3; putative GAR1 protein; F20H23.4;
putative glutamate dehydrogenase; F20H23.5; putative adenylylsulfate
kinase; F20H23.6; F20H23.7; F20H23.8; F20H23.9; F20H23.10; F20H23.11;
putative auxin-induced protein; F20H23.12; tRNA-Thr; F20H23.13;
F20H23.14; F20H23.15; F20H23.16; F20H23.17; putative auxin-independent
growth promoter protein; F20H23.28; s-syntaxin-like protein; F20H23.18;
F20H23.19; putative methionine synthase; F20H23.20; F20H23.21;
F20H23.22; F20H23.23; F20H23.24; F20H23.25; putative cationic amino acid
transporter; F20H23.26; putative polynucleotide phosphorylase;
F20H23.27.
ATAC009991 AC009991 101284bp DNA PLN 08-OCT-1999
Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete
sequence.
HTG; F9F8.1; F9F8.2; putative nucleic acid binding protein; F9F8.3;
putative leucoanthocyanidin dioxygenase; F9F8.4; omega-3 fatty acid
desaturase, chloroplast precursor; F9F8.5; F9F8.6; putative clathrin
heavy chain; F9F8.7; ribosomal protein L41; F9F8.8; F9F8.9; F9F8.10;
F9F8.11; putative disease resistance protein; F9F8.12; F9F8.13; putative
ferritin subunit precursor; F9F8.14; F9F8.15; F9F8.16; DREB2B
transcription factor; F9F8.17; F9F8.18; F9F8.19; F9F8.20; F9F8.21;
F9F8.22; F9F8.23; putative 60S ribosomal protein L37a; F9F8.24; F9F8.25;
F9F8.26; putative [Mn] superoxide dismutase.
ATH012459 AJ012459 564bp mRNA PLN 30-SEP-1999
Arabidopsis thaliana mRNA for AGP6 protein.
agp6 gene; AGP6 protein; agp6.
=========== Updated Sequence Features/Annotations =============
AB003590 AB003590 5045bp DNA PLN 02-OCT-1999
Arabidopsis thaliana DNA for sulfate transporter, complete cds.
sulfate transporter.
AB003591 AB003591 2406bp mRNA PLN 02-OCT-1999
Arabidopsis thaliana mRNA for sulfate transporter, complete cds.
sulfate transporter.
AB005903 AB005903 622bp mRNA PLN 05-OCT-1999
Arabidopsis thaliana AtPH1 mRNA, complete cds.
AtPH1.
AC010924 AC010924 92857bp DNA HTG 30-SEP-1999
Arabidopsis thaliana chromosome 1 clone T24D18, WORKING DRAFT SEQUENCE, 2
ordered pieces.
HTG; HTGS_PHASE2.
AF022082 AF022082 1799bp mRNA PLN 30-SEP-1999
Arabidopsis thaliana sulfolipid biosynthesis protein (SQD1) mRNA,
complete cds.
SQD1; sulfolipid biosynthesis protein.
AF039371 AF039371 9643bp DNA PLN 01-OCT-1999
Arabidopsis thaliana ecotype Ler chromomethylase (CMT1) gene, complete
cds.
CMT1; chromomethylase; polyprotein.
AF039372 AF039372 9643bp DNA PLN 01-OCT-1999
Arabidopsis thaliana ecotype No-0 chromomethylase (CMT1) gene, complete
cds.
chromomethylase; polyprotein.
AF039373 AF039373 9642bp DNA PLN 01-OCT-1999
Arabidopsis thaliana ecotype RLD chromomethylase (CMT1) gene, complete
cds.
CMT1; chromomethylase; polyprotein.
AF146794 AF146794 1133bp DNA PLN 29-SEP-1999
Arabidopsis thaliana NOZZLE (NZZ) gene, complete cds.
NZZ; NOZZLE.
AF177200 AF177200 3273bp DNA PLN 08-OCT-1999
Arabidopsis thaliana chlorophyll a oxygenase (CAO) gene, complete cds.
CAO; chlorophyll a oxygenase.
ATAJ0057 AJ000057 1525bp mRNA PLN 30-SEP-1999
Arabidopsis thaliana mRNA for a serine/threonine protein phosphatase.
serine/threonine protein phosphatase; PP7.
ATH131180 AJ131180 1689bp DNA PLN 06-OCT-1999
Arabidopsis thaliana rps14 gene.
ribosomal protein S14; rps14 gene; rps14; putative.
ATU43397 U43397 2111bp mRNA PLN 04-OCT-1999
Arabidopsis thaliana cryptochrome 2 apoprotein (CRY2) mRNA, complete cds.
CRY2; cryptochrome 2 apoprotein.
ATZ86093 Z86093 1450bp mRNA PLN 30-SEP-1999
A.thaliana mRNA for b-Zip DNA binding protein.
bZIP; DNA binding protein; b-Zip DNA binding protein.
ATZ86094 Z86094 1010bp mRNA PLN 30-SEP-1999
A.thaliana mRNA for plastid protein.
plastid protein.
ATZ86095 Z86095 1018bp mRNA PLN 30-SEP-1999
A.thaliana mRNA for peptidyl-prolyl cis-trans isomerase.
peptidyl-prolyl cis-trans isomerase.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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