New Arabidopsis DNA 19-Sep-1999
AtDB Project
arabidopsis-seq at genome.stanford.edu
Mon Sep 20 10:43:20 EST 1999
====================== New DNA Sequences =======================
AC009894 AC009894 96489bp DNA PLN 16-SEP-1999
Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete
sequence.
HTG.
AC009895 AC009895 85808bp DNA HTG 04-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T21P5, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC009917 AC009917 102569bp DNA HTG 08-SEP-1999
Arabidopsis thaliana chromosome 1 clone F26G16, WORKING DRAFT SEQUENCE, 2
unordered pieces.
HTG; HTGS_PHASE1.
AC009918 AC009918 52279bp DNA HTG 11-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T19F11, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC009978 AC009978 95562bp DNA HTG 09-SEP-1999
Arabidopsis thaliana chromosome 1 clone T23E18, WORKING DRAFT SEQUENCE, 3
unordered pieces.
HTG; HTGS_PHASE1.
AC009991 AC009991 110449bp DNA HTG 16-SEP-1999
Arabidopsis thaliana chromosome III clone IGF-F9F8, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC009992 AC009992 105135bp DNA HTG 15-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T4P3, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC009999 AC009999 94420bp DNA HTG 10-SEP-1999
Arabidopsis thaliana chromosome 1 clone T20M3, WORKING DRAFT SEQUENCE, 2
unordered pieces.
HTG; HTGS_PHASE1.
AC010155 AC010155 103998bp DNA HTG 14-SEP-1999
Arabidopsis thaliana chromosome 1 clone F3M18, WORKING DRAFT SEQUENCE, 3
unordered pieces.
HTG; HTGS_PHASE1.
AC010164 AC010164 101545bp DNA HTG 14-SEP-1999
Arabidopsis thaliana chromosome I clone F14M2, WORKING DRAFT SEQUENCE, 3
unordered pieces.
HTG; HTGS_PHASE1.
AC010556 AC010556 72265bp DNA HTG 15-SEP-1999
Arabidopsis thaliana chromosome I clone TAMU-T18K17, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC010657 AC010657 77310bp DNA HTG 17-SEP-1999
Arabidopsis thaliana chromosome 1 clone T5E21, WORKING DRAFT SEQUENCE, 5
unordered pieces.
HTG; HTGS_PHASE1.
AC010675 AC010675 90030bp DNA HTG 17-SEP-1999
Arabidopsis thaliana chromosome I clone TAMU-T17F3, WORKING DRAFT
SEQUENCE, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC010676 AC010676 63556bp DNA HTG 17-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T22N4, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AF066079 AF066079 1714bp mRNA PLN 15-SEP-1999
Arabidopsis thaliana dihydrolipoamide S-acetyltransferase (LTA2) mRNA,
nuclear gene encoding chloroplast protein, complete cds.
LTA2; dihydrolipoamide S-acetyltransferase.
AF066080 AF066080 2274bp mRNA PLN 15-SEP-1999
Arabidopsis thaliana dihydrolipoamide S-acetyltransferase (LTA3) mRNA,
nuclear gene encoding mitochondrial protein, complete cds.
LTA3; dihydrolipoamide S-acetyltransferase.
AF083035 AF083035 1671bp mRNA PLN 14-SEP-1999
Arabidopsis thaliana ammonium transporter mRNA, complete cds.
ammonium transporter.
AF083036 AF083036 1790bp mRNA PLN 14-SEP-1999
Arabidopsis thaliana ammonium transporter mRNA, complete cds.
ammonium transporter.
AF120932 AF120932 10156bp DNA PLN 14-SEP-1999
Arabidopsis thaliana SMC-like protein (MIM) gene, complete cds.
MIM; SMC-like protein.
AF120933 AF120933 3695bp mRNA PLN 14-SEP-1999
Arabidopsis thaliana SMC-like protein (MIM) mRNA, complete cds.
MIM; SMC-like protein.
AF135454 AF135454 3614bp mRNA PLN 14-SEP-1999
Arabidopsis thaliana telomerase reverse transcriptase (AtTERT) mRNA,
complete cds.
AtTERT; telomerase reverse transcriptase.
AF172097 AF172097 5618bp DNA PLN 15-SEP-1999
Arabidopsis thaliana telomerase reverse transcriptase catalytic subunit
(TERT) gene, complete cds.
TERT; telomerase reverse transcriptase catalytic subunit.
AF175986 AF175986 771bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB22) mRNA, complete
cds.
MYB22; putative transcription factor.
AF175987 AF175987 645bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB24) mRNA, complete
cds.
MYB24; putative transcription factor.
AF175988 AF175988 1104bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB25) mRNA, complete
cds.
MYB25; putative transcription factor.
AF175989 AF175989 1050bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete
cds.
MYB39; putative transcription factor.
AF175990 AF175990 984bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB43) mRNA, complete
cds.
MYB43; putative transcription factor.
AF175991 AF175991 960bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB49) mRNA, complete
cds.
MYB49; putative transcription factor.
AF175992 AF175992 1017bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB76) mRNA, complete
cds.
MYB76; putative transcription factor.
AF175993 AF175993 462bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB85) mRNA, complete
cds.
MYB85; putative transcription factor.
AF175994 AF175994 1341bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB88) mRNA, complete
cds.
MYB88; putative transcription factor.
AF175995 AF175995 573bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB89) mRNA, complete
cds.
MYB89; putative transcription factor.
AF175996 AF175996 1104bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB91) mRNA, complete
cds.
MYB91; putative transcription factor.
AF175997 AF175997 1104bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB26) mRNA, complete
cds.
MYB26; putative transcription factor.
AF175998 AF175998 1101bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB28) mRNA, complete
cds.
MYB28; putative transcription factor.
AF175999 AF175999 861bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB42) mRNA, complete
cds.
MYB42; putative transcription factor.
AF176000 AF176000 1047bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB55) mRNA, complete
cds.
MYB55; putative transcription factor.
AF176001 AF176001 1056bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB96) mRNA, complete
cds.
MYB96; putative transcription factor.
AF176002 AF176002 1170bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB97) mRNA, complete
cds.
MYB97; putative transcription factor.
AF176003 AF176003 1284bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB98) mRNA, complete
cds.
MYB98; putative transcription factor.
AF176004 AF176004 705bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB100) mRNA,
complete cds.
MYB100; putative transcription factor.
AF176005 AF176005 2147bp mRNA PLN 05-SEP-1999
Arabidopsis thaliana putative transcription factor (MYB99) mRNA, partial
cds.
MYB99; putative transcription factor.
AF177200 AF177200 3273bp DNA PLN 10-SEP-1999
Arabidopsis thaliana chlorophyll a oxygenase (CAO) gene, complete cds.
CAO; chlorophyll a oxygenase.
AF177212 AF177212 1779bp mRNA PLN 10-SEP-1999
Arabidopsis thaliana threonine dehydratase/deaminase (omr1) mRNA,
complete cds.
omr1; threonine dehydratase/deaminase.
AF178073 AF178073 753bp mRNA PLN 06-SEP-1999
Arabidopsis thaliana calmodulin 7 (CAM7) mRNA, complete cds.
CAM7; calmodulin 7.
AF178074 AF178074 565bp mRNA PLN 06-SEP-1999
Arabidopsis thaliana calmodulin 8 (CAM8) mRNA, complete cds.
CAM8; calmodulin 8.
AF178075 AF178075 636bp mRNA PLN 06-SEP-1999
Arabidopsis thaliana calmodulin 9 (CAM9) mRNA, complete cds.
CAM9; calmodulin 9.
AF181687 AF181687 1839bp mRNA PLN 15-SEP-1999
Arabidopsis thaliana metal ion transporter (PMIT1) mRNA, complete cds.
PMIT1; metal ion transporter.
AF181688 AF181688 652bp mRNA PLN 15-SEP-1999
Arabidopsis thaliana vacuolar membrane ATPase subunit G (AVMA10) mRNA,
complete cds.
AVMA10; vacuolar membrane ATPase subunit G.
AP000410 AP000410 55161bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K10D20,
complete sequence.
HTG.
AP000411 AP000411 90627bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K11J14,
complete sequence.
HTG.
AP000412 AP000412 24057bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K3G3, complete
sequence.
HTG.
AP000413 AP000413 65047bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K7L4, complete
sequence.
HTG.
AP000414 AP000414 34067bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE15, complete
sequence.
HTG.
AP000415 AP000415 31712bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIG10, complete
sequence.
HTG.
AP000416 AP000416 3059bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLE3, complete
sequence.
HTG.
AP000417 AP000417 73977bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMB12, complete
sequence.
HTG.
AP000418 AP000418 16898bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPK17, complete
sequence.
HTG.
AP000419 AP000419 81875bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11, complete
sequence.
HTG.
AP000420 AP000420 82890bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MZN14, complete
sequence.
HTG.
AP000421 AP000421 72800bp DNA PLN 06-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: T13C12,
complete sequence.
HTG.
AP000423 AP000423 154478bp DNA circular PLN
Arabidopsis thaliana chloroplast genomic DNA, complete sequence,
strain:Columbia.
trnH; tRNA-His(GUG); psbA; PSII 32 KDa protein; trnK; tRNA-Lys(UUU);
matK; rps16; ribosomal protein S16; trnQ; tRNA-Gln(UUG); psbK; PSII K
protein; psbI; PSII I protein; trnS; tRNA-Ser(GCU); trnG; tRNA-Gly(UCC);
trnR; tRNA-Arg(UCU); atpA; ATPase alpha subunit; atpF; ATPase I subunit;
atpH; ATPase III subunit; atpI; ATPase a subunit; rps2; ribosomal
protein S2; rpoC2; RNA polymerase beta' subunit-2; rpoC1; RNA polymerase
beta' subunit-1; rpoB; RNA polymerase beta subunit; trnC; tRNA-Cys(GCA);
ycf6; psbM; PSII low MW protein; trnD; tRNA-Asp(GUC); trnY;
tRNA-Tyr(GUA); trnE; tRNA-Glu(UUC); trnT; tRNA-Thr(GGU); psbD; PSII D2
protein; psbC; PSII 43 KDa protein; tRNA-Ser(UGA); ycf9; tRNA-Gly(GCC);
trnfM; tRNA-fMet(CAU); rps14; ribosomal protein S14; psaB; PSI P700
apoprotein A2; psaA; PSI P700 apoprotein A1; ycf3; tRNA-Ser(GGA); rps4;
ribosomal protein S4; tRNA-Thr(UGU); trnL; tRNA-Leu(UAA); trnF;
tRNA-Phe(GAA); ndhJ; NADH dehydrogenase subunit; psbG; photosystem II G
protein; ndhC; NADH dehydrogenase D3; trnV; tRNA-Val(UAC); trnM;
tRNA-Met(CAU); atpE; ATPase epsilon subunit; atpB; ATPase beta subunit;
rbcL; large subunit of riblose-1,5-bisphosphate carboxylase/oxygenase;
accD; carboxytransferase beta subunit; psaI; PSI I protein; ycf4;
ycf10/cemA; petA; cytochrome f; psbJ; PSII component; psbL; PSII L
protein; psbF; PSII cytochrome b559; psbE; ORF31; petG; cytochrome b6-f
complex, subunit V; trnW; tRNA-Trp(CCA); trnP; tRNA-Pro(UGG); psaJ; PSI
J protein; rpl33; ribosomal protein L33; rps18; ribosomal protein S18;
rpl20; ribosomal protein L20; clpP; ATP-dependent protease subunit;
psbB; PSII 47KDa protein; psbT; PSII T protein; psbN; psbH; PSII 10KDa
phosphoprotein; petB; cytochrome B6; petD; cytochrome b/f; rpoA; RNA
polymerase alpha subunit; rps11; ribosomal protein S11; rpl36; ribosomal
protein L36; rps8; ribosomal protein S8; rpl14; ribosomal protein L14;
rpl16; ribosomal protein L16; rps3; ribosomal protein S3; rpl22;
ribosomal protein L22; rps19; ribosomal protein S19; rpl2; ribosomal
protein L2; rpl23; ribosomal protein L23; trnI; tRNA-Ile(CAU); ycf2;
orf77; tRNA-Leu(CAA); ndhB; NADH dehydrogenase ND2; rps7; ribosomal
protein S7; rps12; ribosomal protein S12; tRNA-Val(GAC); rrn16S; 16S
ribosomal RNA; tRNA-Ile(GAU); trnA; tRNA-Ala(UGC); rrn23S; 23S ribosomal
RNA; rrn4.5S; 4.5S ribosomal RNA; rrn5s; 5S ribosomal RNA;
tRNA-Arg(ACG); trnN; tRNA-Asn(GUU); ycf1; ndhF; NADH dehydrogenase ND5;
rpl32; ribosomal protein L32; tRNA-Leu(UAG); ycf5; ndhD; NADH
dehydrogenase ND4; psaC; PSI 9KDa protein; ndhE; NADH dehydrogenase
ND4L; ndhG; NADH dehydrogenase ND6; ndhI; ndhA; NADH dehydrogenase ND1;
ndhH; NADH dehydrogenase 49KDa protein; rps15; ribosomal protein S15;
rrn5S.
ATF15J1 AL117188 27408bp DNA PLN 03-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F15J1, partial sequence
(ESSA project).
F15J1.10; putative protein; F15J1.20; ankyrin repeat-containing protein
2; F15J1.30; thioredoxin reductase (NADPH) 2; F15J1.40; F15J1.50;
RING-H2 finger protein RHA3b; F15J1.60; ribosomal protein L11 homolog.
ATGAPQ AL117321 811bp DNA PLN 09-SEP-1999
Arabidopsis thaliana DNA chromosome 4, PCR fragment (ESSA project).
ATH010505 AJ010505 1404bp mRNA PLN 02-SEP-1999
Arabidopsis thaliana mRNA for cysteine synthase.
cysteine synthase; oas5 gene; oas5.
ATH011044 AJ011044 689bp mRNA PLN 10-SEP-1999
Arabidopsis thaliana mRNA for cysteine synthase (oas6 gene).
cysteine synthase; oas6 gene; oas6.
ATH011045 AJ011045 1557bp mRNA PLN 06-SEP-1999
Arabidopsis thaliana mRNA for thiosulfate sulfurtransferase (RDH1 gene).
RDH1 gene; thiosulfate sulfurtransferase; RDH1.
ATH132237 AJ132237 2789bp DNA PLN 02-SEP-1999
Arabidopsis thaliana ger3 gene.
ger3 gene; GER3 protein; ger3.
ATH132843 AJ132843 1998bp mRNA PLN 01-SEP-1999
Arabidopsis thaliana mRNA for mitochondrial RNA helicase.
mitochondrion; RNA helicase; suv3 gene; suv3; mitochondrial RNA helicase.
ATH238846 AJ238846 887bp mRNA PLN 02-SEP-1999
Arabidopsis thaliana mRNA for SGP1 monomeric G-protein.
sgp1 gene; SGP1 monomeric G-protein; sgp1.
ATH242647 AJ242647 5099bp DNA PLN 02-SEP-1999
Arabidopsis thaliana CM1 gene for plastidic chorismate mutase, exons 1-6.
chorismate mutase; CM1 gene; CM1.
ATH242648 AJ242648 5177bp DNA PLN 02-SEP-1999
Arabidopsis thaliana CM2 gene for cytosolic chorismate mutase, exons 1-6.
chorismate mutase; CM2 gene; CM2.
ATH245414 AJ245414 2037bp mRNA PLN 01-SEP-1999
Arabidopsis thaliana mRNA for methylenetetrahydrofolate reductase.
methylenetetrahydrofolate; 5,10-methylenetetrahydrofolate reductase;
MTHFR1; methylenetetrahydrofolate reductase.
ATH245744 AJ245744 1366bp DNA PLN 10-SEP-1999
Arabidopsis thaliana partial gst8 gene for glutathione transferase,
promoter.
glutathione transferase; gst8 gene; gst8.
ATH249204 AJ249204 4037bp DNA PLN 02-SEP-1999
Arabidopsis thaliana pyk20 gene, promoter region.
promoter; pyk20 gene; pyk20.
ATH249263 AJ249263 4593bp DNA PLN 01-SEP-1999
Arabidopsis thaliana rps4-RLD gene for disease resistance protein,
ecotype RLD.
disease resistance protein rps4-RLD; rps4-RLD gene; rps4-RLD.
ATH249264 AJ249264 4586bp DNA PLN 13-SEP-1999
Arabidopsis thaliana RPS4-Ler gene for disease resistance protein,
ecotype Landsberg erecta.
disease resistance protein RPS4-Ler; RPS4-Ler gene; RPS4-Ler.
ATH249442 AJ249442 1644bp mRNA PLN 13-SEP-1999
Arabidopsis thaliana mRNA for putative AUX1-like permease (LAX1 gene).
AUX1-like permease; LAX1 gene; lax1; putative AUX1-like permease.
ATJ00164 AJ001364 2631bp DNA PLN 06-SEP-1999
Arabidopsis thaliana promoter of disaccharide transporter gene AtSUC1.
disaccharide transporter; AtSUC1; disaccharide tranporter.
ATLS1 X58827 517bp mRNA PLN 09-SEP-1999
A. THALIANA AT-LS1 CDNA.
light-inducible protein; AT-LS1; AT-LS1 product.
ATT30A10 AL117386 83369bp DNA PLN 13-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone T30A10 (ESSA project).
T30A10.10; putative protein; T30A10.20; T30A10.30; T30A10.40; T30A10.50;
T30A10.60; T30A10.70; T30A10.80; nucleoside-diphosphate kinase;
T30A10.90; T30A10.100; T30A10.110.
D84225 D84225 5166bp mRNA PLN 15-SEP-1999
Arabidopsis thaliana mRNA for DEIH-box RNA/DNA helicase, complete cds.
DEIH-box RNA/DNA helicase.
==================== Updated DNA Sequences =====================
AC006192 AC006192 97905bp DNA PLN 04-SEP-1999
Arabidopsis thaliana BAC T24G3 from chromosome V near 70 cM, complete
sequence.
HTG.
AC006551 AC006551 105420bp DNA HTG 14-SEP-1999
Arabidopsis thaliana chromosome I clone F12K8, WORKING DRAFT SEQUENCE, 2
unordered pieces.
HTG; HTGS_PHASE1.
AC006837 AC006837 91344bp DNA HTG 11-SEP-1999
Arabidopsis thaliana chromosome II clone IGF-F23H14, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC007152 AC007152 84212bp DNA HTG 14-SEP-1999
Arabidopsis thaliana chromosome I clone F1O19, WORKING DRAFT SEQUENCE, 4
unordered pieces.
HTG; HTGS_PHASE1.
AC007348 AC007348 3685bp DNA HTG 11-SEP-1999
Arabidopsis thaliana chromosome II clone ATRT-pAtT51, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC007797 AC007797 107083bp DNA HTG 14-SEP-1999
Arabidopsis thaliana chromosome I clone F6F9, WORKING DRAFT SEQUENCE, 8
unordered pieces.
HTG; HTGS_PHASE1.
AC008007 AC008007 130234bp DNA PLN 16-SEP-1999
Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I,
complete sequence.
HTG.
AC008016 AC008016 117737bp DNA PLN 14-SEP-1999
Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence.
HTG.
AC008047 AC008047 100855bp DNA HTG 11-SEP-1999
Arabidopsis thaliana chromosome 1 clone F2K11, WORKING DRAFT SEQUENCE, 1
ordered pieces.
HTG; HTGS_PHASE2.
F25A4 AC008263 115721bp DNA PLN 15-SEP-1999
Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence.
HTG; F25A4.1; F25A4.2; F25A4.3; F25A4.4; F25A4.5; F25A4.6; F25A4.7;
F25A4.8; F25A4.9; F25A4.10; F25A4.11; F25A4.12; F25A4.13; F25A4.14;
F25A4.15; F25A4.16; F25A4.17; F25A4.18; F25A4.19; F25A4.20; F25A4.21;
F25A4.22; F25A4.23; F25A4.24; F25A4.25; F25A4.26; F25A4.27; F25A4.28;
F25A4.29; F25A4.30; F25A4.31; F25A4.32; F25A4.33; F25A4.34.
AC009243 AC009243 110565bp DNA PLN 11-SEP-1999
Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I,
complete sequence.
HTG.
AC009317 AC009317 100008bp DNA PLN 16-SEP-1999
Genomic sequence for Arabidopsis thaliana BAC T30E16 from chromosome I,
complete sequence.
HTG.
AC009325 AC009325 114494bp DNA HTG 16-SEP-1999
Arabidopsis thaliana chromosome III clone IGF-F4P13, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC009326 AC009326 109436bp DNA HTG 08-SEP-1999
Arabidopsis thaliana chromosome III clone MITSUI-MZB10, WORKING DRAFT
SEQUENCE, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC009327 AC009327 97363bp DNA HTG 10-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T12J13, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC009328 AC009328 118434bp DNA HTG 04-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T28G19, WORKING DRAFT
SEQUENCE, 15 unordered pieces.
HTG; HTGS_PHASE1.
AC009525 AC009525 100239bp DNA PLN 15-SEP-1999
Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete
sequence.
HTG.
AC009526 AC009526 101870bp DNA HTG 14-SEP-1999
Arabidopsis thaliana chromosome I clone F2J6, WORKING DRAFT SEQUENCE, 6
unordered pieces.
HTG; HTGS_PHASE1.
AC009529 AC009529 79402bp DNA HTG 16-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T25F15, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC009755 AC009755 102937bp DNA HTG 10-SEP-1999
Arabidopsis thaliana chromosome III clone IGF-F14P3, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
ATH012571 AJ012571 967bp mRNA PLN 06-SEP-1999
Arabidopsis thaliana mRNA for glutathione transferase.
glutathione transferase; gst8 gene; gst8.
ATT1P17 AL049730 137519bp DNA PLN 01-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project).
T1P17.10; putative pollen-specific protein; T1P17.20; putative
trehalose-6-phosphate phosphatase (AtTPPA); T1P17.30; putative adenine
phosphoribosyltransferase; T1P17.40; putative protein; T1P17.50;
putative SWH1 protein; T1P17.60; pEARLI 1-like protein; T1P17.70; pEARLI
1; T1P17.80; T1P17.90; T1P17.100; T1P17.110; T1P17.120; AIR1A-like
protein; T1P17.130; hypothetical protein; T1P17.140; putative cell
wall-plasma membrane disconnecting CLCT protein (AIR1A); T1P17.150;
T1P17.160; polyubiquitin-like protein; T1P17.170; T1P17.180; T1P17.190;
Ribosomal protein L7Ae-like; T1P17.200; T1P17.210; origin recognition
complex subunit 1-like protein; T1P17.220; T1P17.230; T1P17.240.
=========== Updated Sequence Features/Annotations =============
AB008265 AB008265 81662bp DNA PLN 15-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDC12, complete
sequence.
HTG.
AB008266 AB008266 48622bp DNA PLN 15-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MHJ24, complete
sequence.
HTG.
AB008267 AB008267 79046bp DNA PLN 15-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MMG4, complete
sequence.
HTG.
AB008268 AB008268 83594bp DNA PLN 15-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSJ1, complete
sequence.
HTG.
AB008269 AB008269 61634bp DNA PLN 15-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSL3, complete
sequence.
HTG.
AB008270 AB008270 50641bp DNA PLN 15-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTG13, complete
sequence.
HTG.
AB008271 AB008271 79073bp DNA PLN 15-SEP-1999
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUK11, complete
sequence.
HTG.
AC008148 AC008148 110514bp DNA PLN 16-SEP-1999
Arabidopsis thaliana chromosome I BAC F15H11 genomic sequence, complete
sequence.
HTG; F15H11.1; F15H11.2; F15H11.3; F15H11.4; F15H11.5; F15H11.6;
F15H11.7; F15H11.8; F15H11.9; F15H11.10; F15H11.11; F15H11.12;
F15H11.13; F15H11.14; auxin transport protein; F15H11.15; F15H11.16;
F15H11.17; F15H11.18; F15H11.19; F15H11.20; F15H11.21; F15H11.22.
AC009322 AC009322 116905bp DNA PLN 16-SEP-1999
Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete
sequence.
HTG; F18B13.1; F18B13.2; F18B13.3; F18B13.4; F18B13.5; F18B13.6;
F18B13.7; F18B13.8; F18B13.10; F18B13.11; F18B13.12; F18B13.13;
F18B13.14; adenine phosphoribosyltransferase; F18B13.15; F18B13.16;
F18B13.17; F18B13.18; F18B13.19; F18B13.20; F18B13.21; F18B13.22;
F18B13.23; F18B13.24; F18B13.25; F18B13.26; F18B13.27; F18B13.28;
F18B13.29; F18B13.30; F18B13.31.
AC009324 AC009324 85413bp DNA PLN 14-SEP-1999
Arabidopsis thaliana chromosome I BAC T18A20 genomic sequence, complete
sequence.
HTG.
AF087015 AF087015 965bp mRNA PLN 07-SEP-1999
Arabidopsis thaliana abnormal floral organs protein (AFO) mRNA, complete
cds.
AFO; abnormal floral organs protein.
AF159255 AF159255 1302bp mRNA PLN 08-SEP-1999
Arabidopsis thaliana sporocyteless (SPL) mRNA, complete cds.
SPL; sporocyteless.
ATF24J7 AL021768 86554bp DNA PLN 08-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F24J7 (ESSA project).
F24J7.20; putative protein; F24J7.30; F24J7.40; hypothetical protein;
F24J7.50; F24J7.60; resistence protein-like; F24J7.70; TMV resistance
protein N-like; F24J7.80; resistance protein RPP5-like; F24J7.90;
F24J7.100; ATP binding protein-like; F24J7.110; F24J7.120; F24J7.130;
F24J7.140; F24J7.150; F24J7.161; F24J7.162; F24J7.170; F24J7.180;
F24J7.190; small GTP-binding protein-like.
ATF25I24 AL049525 95799bp DNA PLN 08-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F25I24 (ESSA project).
F25I24.10; putative protein; F25I24.20; F25I24.30; F25I24.40; F25I24.50;
F25I24.60; F25I24.70; F25I24.80; F25I24.90; F25I24.100; F25I24.110;
F25I24.120; hypothetical protein; F25I24.130; F25I24.140; F25I24.150;
putative RING finger protein; F25I24.160; F25I24.170; UDP-galactose
4-epimerase-like protein; F25I24.180; F25I24.190; F25I24.200; putative
retrotransposon polyprotein; F25I24.210; F25I24.220; nucleoside
diphosphate kinase 3 (ndpk3); F25I24.230.
ATF28A21 AL035526 94301bp DNA PLN 08-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project).
F28A21.20; putative protein; F28A21.30; F28A21.40; F28A21.50; putative
protein (fragment); F28A21.60; F28A21.70; F28A21.80; extensin-like
protein; F28A21.90; F28A21.100; F28A21.110; putative protein kinase;
F28A21.120; shaggy-like protein kinase etha (EC 2.7.1.-); F28A21.130;
F28A21.140; ribosomal protein L11, cytosolic; F28A21.150; hypothetical
protein; F28A21.160; F28A21.170; F28A21.180; myb-like protein;
F28A21.190; cellulose synthase-like protein; F28A21.200; ion
transporter-like protein; F28A21.210; ras-like GTP-binding protein;
F28A21.220; F28A21.230.
ATF28M11 AL049487 85907bp DNA PLN 08-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F28M11 (ESSA project).
F28M11.10; hypothetical protein; F28M11.20; F28M11.30; putative protein;
F28M11.40; sucrose-phosphate synthase-like protein; F28M11.50;
F28M11.60; F28M11.70; F28M11.80; F28M11.90; F28M11.100; Deetiolated1
(DET1) light signal transduction protein; F28M11.110; F28M11.120.
ATH010500 AJ010500 1304bp mRNA PLN 06-SEP-1999
Arabidopsis thaliana mRNA for thiosulfate sulfurtransferase (RDH2 gene).
RDH2 gene; thiosulfate sulfurtransferase; RDH2.
ATH132387 AJ132387 3254bp mRNA PLN 06-SEP-1999
Arabidopsis thaliana mRNA for Ca2+-ATPase, ECA2 gene.
Ca2+-ATPase; ECA2 gene; ECA2.
ATH132388 AJ132388 3062bp mRNA PLN 06-SEP-1999
Arabidopsis thaliana mRNA for Ca2+-ATPase, ECA3 gene.
Ca2+-ATPase; ECA3 gene; ECA3.
ATH145957 AJ145957 1159bp mRNA PLN 02-SEP-1999
Arabidopsis thaliana mRNA for precursor of the 33 kDa subunit of the
oxygen evolving complex (psbO2 gene).
oxygen evolving complex; photosystem II; precursor; psbO2 gene; subunit;
psbO2; precursor of the 33 kDa subunit of the oxygen evolving complex;
33 kDa subunit of the oxygen evolving complex.
ATH245967 AJ245967 7080bp DNA PLN 09-SEP-1999
Arabidopsis thaliana msh6-1 gene for mismatch repair protein msh6-1.
mismatch repair protein; msh6-1 gene; msh6-1; mismatch repair protein
msh6-1.
ATM4I22 AL030978 83371bp DNA PLN 02-SEP-1999
Arabidopsis thaliana DNA chromosome 4, P1 clone M4I22 (ESSA project).
M4I22.10; putative protein; M4I22.20; M4I22.30; M4I22.40; histone
H2A-like protein; M4I22.50; hypothetical protein; M4I22.60; M4I22.70;
GH3 like protein; M4I22.80; M4I22.90; M4I22.100; putative receptor like
kinase; M4I22.110; putative receptor protein kinase; M4I22.120;
M4I22.130; M4I22.140; NOZZLE/SPOROCYTELESS; M4I22.150; M4I22.160;
M4I22.170; M4I22.180; myosin heavy chain-like protein; M4I22.190;
M4I22.200; M4I22.210.
ATT5K18 AL022580 90551bp DNA PLN 08-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone T5K18 (ESSA project).
T5K18.20; hypothetical protein; T5K18.30; putative protein; T5K18.40;
T5K18.50; T5K18.60; T5K18.70; T5K18.80; hypothtetical protein; T5K18.90;
T5K18.100; T5K18.110; puatative protein; T5K18.120; T5K18.130;
T5K18.140; T5K18.150; T5K18.160; T5K18.170; T5K18.180; T5K18.190;
putative pectinacetylesterase protein; T5K18.200; putative
pectinacetylesterase; T5K18.210; T5K18.220; T5K18.230.
D88036 D88036 1468bp mRNA PLN 09-SEP-1999
Arabidopsis thaliana mRNA for UDP-GlcNAc:dolichol phosphate
N-acetylglucosamine-1-phosphate transferase, complete cds.
UDO-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate;
UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate
transferase.
D88037 D88037 2536bp DNA PLN 09-SEP-1999
Arabidopsis thaliana gene for UDP-GlcNAc:dolichol phosphate
N-acetylglucosamine-1-phosphate transferase, complete cds.
UDO-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate;
UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate
transferase.
F25A4 AC008263 115721bp DNA PLN 15-SEP-1999
Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence.
HTG; F25A4.1; F25A4.2; F25A4.3; F25A4.4; F25A4.5; F25A4.6; F25A4.7;
F25A4.8; F25A4.9; F25A4.10; F25A4.11; F25A4.12; F25A4.13; F25A4.14;
F25A4.15; F25A4.16; F25A4.17; F25A4.18; F25A4.19; F25A4.20; F25A4.21;
F25A4.22; F25A4.23; F25A4.24; F25A4.25; F25A4.26; F25A4.27; F25A4.28;
F25A4.29; F25A4.30; F25A4.31; F25A4.32; F25A4.33; F25A4.34.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
More information about the Arab-gen
mailing list