New Arabidopsis DNA 27-Sep-1999
AtDB Project
arabidopsis-seq at genome.stanford.edu
Mon Sep 27 20:40:31 EST 1999
====================== New DNA Sequences =======================
AB032412 AB032412 5719bp DNA PLN 21-SEP-1999
Arabidopsis thaliana f-AtMBP gene for myrosinase binding protein, partial
cds.
myrosinase binding protein; f-AtMBP.
AC010704 AC010704 110456bp DNA HTG 23-SEP-1999
Arabidopsis thaliana chromosome I clone TAMU-T5M16, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC010718 AC010718 96151bp DNA HTG 21-SEP-1999
Arabidopsis thaliana chromosome I clone IGF-F28O16, WORKING DRAFT
SEQUENCE, 7 unordered pieces.
HTG; HTGS_PHASE1.
AC010793 AC010793 87220bp DNA HTG 23-SEP-1999
Arabidopsis thaliana chromosome 1 clone F20B17, WORKING DRAFT SEQUENCE, 8
unordered pieces.
HTG; HTGS_PHASE1.
AC010795 AC010795 107551bp DNA HTG 23-SEP-1999
Arabidopsis thaliana chromosome I clone IGF-F16M19, WORKING DRAFT
SEQUENCE, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC010796 AC010796 91160bp DNA HTG 24-SEP-1999
Arabidopsis thaliana chromosome I clone IGF-F24J13, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC010797 AC010797 98069bp DNA HTG 23-SEP-1999
Arabidopsis thaliana chromosome III clone IGF-F28J7, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC010852 AC010852 83951bp DNA HTG 24-SEP-1999
Arabidopsis thaliana chromosome I clone TAMU-T12P18, WORKING DRAFT
SEQUENCE, 8 unordered pieces.
HTG; HTGS_PHASE1.
AC010870 AC010870 87412bp DNA HTG 25-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T13O15, WORKING DRAFT
SEQUENCE, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC010871 AC010871 81017bp DNA HTG 25-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T16O11, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AF026167 AF026167 1217bp mRNA PLN 20-SEP-1999
Arabidopsis thaliana ankyrin repeat protein EMB506 mRNA, complete cds.
EMB506; ankyrin repeat protein EMB506.
AF055189 AF055189 675bp DNA PLN 19-SEP-1999
Arabidopsis thaliana clone 1 pistillata gene, intron 1, partial sequence.
pistillata.
AF055190 AF055190 673bp DNA PLN 19-SEP-1999
Arabidopsis thaliana clone 2 pistillata gene, intron 1, partial sequence.
pistillata.
AF162279 AF162279 2005bp mRNA PLN 24-SEP-1999
Arabidopsis thaliana 10-formyltetrahydrofolate synthetase (THFS) mRNA,
complete cds.
THFS; 10-formyltetrahydrofolate synthetase.
AF181966 AF181966 1994bp mRNA PLN 20-SEP-1999
Arabidopsis thaliana methylenetetrahydrofolate reductase MTHFR1 mRNA,
complete cds.
methylenetetrahydrofolate reductase MTHFR1.
AF181967 AF181967 1897bp mRNA PLN 20-SEP-1999
Arabidopsis thaliana methylenetetrahydrofolate reductase MTHFR2 mRNA,
complete cds.
methylenetetrahydrofolate reductase MTHFR2.
ATH011048 AJ011048 3261bp DNA PLN 15-SEP-1999
Arabidopsis thaliana eli5 gene, exons 1-11.
eli5 gene; tyrosine decarboxylase; eli5.
ATH011049 AJ011049 1811bp mRNA PLN 15-SEP-1999
Arabidopsis thaliana mRNA for tyrosine decarboxylase.
eli5 gene; tyrosine decarboxylase; eli5.
ATH133786 AJ133786 3522bp mRNA PLN 15-SEP-1999
Arabidopsis thaliana mRNA for gigantea protein.
gi gene; gigantea protein; gi.
ATH242970 AJ242970 630bp mRNA PLN 17-SEP-1999
Arabidopsis thaliana mRNA for BTF3b-like factor.
btf3 gene; BTF3b-like factor; btf3.
==================== Updated DNA Sequences =====================
AC007633 AC007633 97876bp DNA PLN 21-SEP-1999
Arabidopsis thaliana BAC T25P22 from chromosome 4, complete sequence.
HTG; T25P22.10; calmodulin-domain protein kinase CDPK isoform 4 (CPK4);
T25P22.20; putative protein; T25P22.30; weak similarity to hin1 protein
- Nicotiana tabacum, PIR2:T03265; T25P22.40; giberellin-regulated
protein GASA3 precursor; T25P22.50; T25P22.60; T25P22.70; T25P22.80;
similarity to several hypothetical proteins- Arabidopsis thaliana;
T25P22.90; H+-transporting ATP synthase-like protein.
AC009398 AC009398 94050bp DNA HTG 22-SEP-1999
Arabidopsis thaliana chromosome 1 clone F20B24, WORKING DRAFT SEQUENCE, 4
unordered pieces.
HTG; HTGS_PHASE1.
AC009992 AC009992 105061bp DNA HTG 18-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T4P3, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC010556 AC010556 72347bp DNA HTG 23-SEP-1999
Arabidopsis thaliana chromosome I clone TAMU-T18K17, WORKING DRAFT
SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC010675 AC010675 90961bp DNA HTG 25-SEP-1999
Arabidopsis thaliana chromosome I clone TAMU-T17F3, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC010676 AC010676 63556bp DNA HTG 22-SEP-1999
Arabidopsis thaliana chromosome III clone TAMU-T22N4, WORKING DRAFT
SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AF176005 AF176005 2639bp mRNA PLN 21-SEP-1999
Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1)
mRNA, complete cds.
AtMYB3R-1; putative c-myb-like transcription factor.
ATAC009326 AC009326 85561bp DNA PLN 25-SEP-1999
Arabidopsis thaliana chromosome III P1 MZB10 genomic sequence, complete
sequence.
HTG; MZB10.1; putative signal peptidase; MZB10.2; Yippee-like protein;
MZB10.3; MZB10.4; putative receptor ser/thr protein kinase; MZB10.5;
MZB10.6; MZB10.7; MZB10.8; MZB10.9; MZB10.10; MZB10.11; MZB10.12;
MZB10.13; putative mRNA capping enzyme, RNA guanylyltransferase;
MZB10.14; MZB10.15; MZB10.16; MZB10.17; MZB10.18; MZB10.19; MZB10.20;
MZB10.21; MZB10.22; MZB10.23; putative lectin; MZB10.24; putative 60S
acidic ribosomal protein, 5' partial.
ATT5J17 AL035708 118267bp DNA PLN 21-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project).
T5J17.10; putative protein; T5J17.20; T5J17.30; T5J17.40; T5J17.50;
T5J17.60; small GTP-binding protein-like; T5J17.70; hypothetical
protein; T5J17.80; ubiquitin-specific protease (AtUBP3); T5J17.90;
T5J17.100; T5J17.110; adenosine-5'-phosphosulfate-kinase; T5J17.120;
cytochrome P450-like protein; T5J17.130; DnaJ-like protein; T5J17.140;
T5J17.150; 2-dehydro-3-deoxyphosphoheptonate aldolase; T5J17.160;
GTP-binding protein GB3; T5J17.170; proliferating-cell nucleolar
antigen-like protein; T5J17.180; putative serine/threonine protein
kinase; T5J17.190; T5J17.200; histone H3.3; T5J17.210; Histon H3;
T5J17.220; T5J17.230; homeodomain-like protein; T5J17.240; T5J17.250.
=========== Updated Sequence Features/Annotations =============
AC008017 AC008017 116944bp DNA PLN 18-SEP-1999
Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete
sequence.
HTG; F3N23.1; Putative threonine synthase; F3N23.2; F3N23.3;
Transcription Factor; F3N23.4; Similar to disease resistance proteins;
F3N23.5; Similar to part of downy mildew resistance protein RPP5;
F3N23.6; Similar to downy mildew resistance protein RPP5; F3N23.7;
Similar to disease resistance protein NL25; F3N23.8; F3N23.9; Similar to
part of disease resistance protein; F3N23.10; F3N23.11; F3N23.12;
F3N23.13; F3N23.14; Similar to NL27; F3N23.15; Similar to part of
disease resistance protein RPP1-WsA; F3N23.16; Putative GTP-binding
protein; F3N23.17; ACE; F3N23.18; F3N23.19; Similar to acid
beta-galactosidase; F3N23.20; F3N23.21; F3N23.22; F3N23.23; Highly
similar to developmental protein DG1118; F3N23.24; Similar to jacalin;
F3N23.25; Similar to (R)-mandelonitrile lyase isoform 1 precursor;
F3N23.26; F3N23.27; Highly similar to receptor-like protein kinase;
F3N23.28; F3N23.29; F3N23.30; F3N23.31; Highly similar to
ribulose-1,5-bisphosphate carboxylase/oxygenase activase; F3N23.32;
F3N23.33; F3N23.34; F3N23.35; Highly similar to non intermediate
filament IFA binding protein; F3N23.36.
AF059581 AF059581 1802bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana S-adenosyl-L-homocysteine hydrolase (SAHH) mRNA,
complete cds.
SAHH; S-adenosyl-L-homocysteine hydrolase.
AF132013 AF132013 1664bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana RING-H2 zinc finger protein ATL3 (ATL3) mRNA,
complete cds.
ATL3; RING-H2 zinc finger protein ATL3.
AF132014 AF132014 1499bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana RING-H2 zinc finger protein ATL4 (ATL4) mRNA,
complete cds.
ATL4; RING-H2 zinc finger protein ATL4.
AF132015 AF132015 1216bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana RING-H2 zinc finger protein ATL5 (ATL5) mRNA,
complete cds.
ATL5; RING-H2 zinc finger protein ATL5.
AF132016 AF132016 1386bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana RING-H2 zinc finger protein ATL6 (ATL6) mRNA,
complete cds.
ATL6; RING-H2 zinc finger protein ATL6.
AF132742 AF132742 2050bp mRNA PLN 21-SEP-1999
Arabidopsis thaliana 3-phosphoinositide-dependent protein kinase-1 (PDK1)
mRNA, complete cds.
PDK1; 3-phosphoinositide-dependent protein kinase-1.
AF151646 AF151646 2331bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds.
PC-MYB1.
AF151647 AF151647 1314bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana PC-MYB2 (PC-MYB2) mRNA, complete cds.
PC-MYB2.
AF165429 AF165429 1947bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana protein phosphatase 2A 62 kDa B'' regulatory subunit
mRNA, complete cds.
protein phosphatase 2A 62 kDa B'' regulatory subunit.
AF167983 AF167983 1511bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana putative pyruvate dehydrogenase beta subunit mRNA,
complete cds; nuclear gene encoding plastid protein.
putative pyruvate dehydrogenase beta subunit.
AF170550 AF170550 5437bp DNA PLN 23-SEP-1999
Arabidopsis thaliana germin-like protein 7 (GLP7) gene, complete cds.
GLP7; germin-like protein 7.
ATEGP X73222 1617bp mRNA PLN 24-SEP-1999
A.thaliana mRNA for exopolygalacturonase.
exopolygalacturonase.
ATEXOPA X72291 1477bp mRNA PLN 24-SEP-1999
A.thaliana (clone GBGe184) mRNA for exopolygalacturonase.
exopolygalacturonase.
ATEXOPB X72292 1652bp mRNA PLN 24-SEP-1999
A.thaliana (clone GBGa483) mRNA for exopolygalacturonase.
exopolygalacturonase.
ATF13C5 AL021711 119111bp DNA PLN 23-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project).
F13C5.5; putative protein; F13C5.10; F13C5.20; hypothetical protein;
F13C5.30; F13C5.40; heat shock transcription factor-like protein;
F13C5.50; F13C5.60; F13C5.70; F13C5.80; major intrinsic protein
(MIP)-like; F13C5.90; F13C5.100; cyclic phosphodiesterase; F13C5.110;
cyclic phosphodiesterase-like protein; F13C5.120; protein kinase-like
protein; F13C5.130; floral homeotic protein agamous; F13C5.140;
F13C5.150; F13C5.160; xyloglucan endo-transglycosylase-like protein;
F13C5.170; F13C5.180; 4-coumarate-CoA ligase-like; F13C5.190; F13C5.200;
nodulin-26-like protein; F13C5.210; F13C5.220; F13C5.240; F13C5.230;
cadmium-induced protein; F13C5.250; F13C5.260.
ATF18F4 AL021637 99725bp DNA PLN 23-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project).
F18F4.5; putative protein, fragment; F18F4.6; putative protein; F18F4.10;
hypothetical protein; F18F4.20; downy mildew resistance-like protein;
F18F4.30; F18F4.40; F18F4.50; F18F4.60; potassium transporter-like
protein; F18F4.70; F18F4.80; F18F4.90; F18F4.100; F18F4.110; F18F4.120;
DAG-like protein; F18F4.130; F18F4.140; F18F4.150; F18F4.160; F18F4.170;
hyuC-like protein; F18F4.180; Phosphoribosylanthranilate transferase;
F18F4.190; membrane-associated salt-inducible-like protein; F18F4.200;
F18F4.210; vacuolar sorting receptor-like protein; F18F4.220; F18F4.230;
F18F4.240; leucine rich repeat-like protein (fragment).
ATF1C12 AL022224 111945bp DNA PLN 20-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSA project).
F1C12.60; leucine rich repeat-like protein; F1C12.70; putative protein;
F1C12.80; Glu-rich protein; F1C12.90; F1C12.100; retrotransposon like
protein (fragment); F1C12.110; hypothetical protein; F1C12.120; terpene
cyclase like protein; F1C12.130; cadinene synthase like protein;
F1C12.140; F1C12.150; F1C12.160; cytochrome p450 like protein;
F1C12.170; F1C12.180; endomembrane-associated protein; F1C12.190; CLV1
receptor kinase like protein; F1C12.195; F1C12.200; F1C12.211;
F1C12.220; F1C12.230; CTP synthase like protein.
ATF4I10 AL035525 111876bp DNA PLN 20-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F4I10 (ESSA project).
F4I10.10; putative protein kinase; F4I10.20; aminopeptidase-like protein;
F4I10.30; putative protein; F4I10.40; F4I10.50; F4I10.60; hypothetical
protein; F4I10.70; F4I10.80; lysine-ketoglutarate
reductase/saccharopine; F4I10.90; F4I10.100; F4I10.110; F4I10.120;
F4I10.130; myosin-like protein; F4I10.140; F4I10.150;
pectinesterase-like protein; F4I10.160; F4I10.170.
ATH005584 AJ005584 1350bp mRNA PLN 24-SEP-1999
Arabidopsis thaliana mRNA for polygalacturonase.
polygalacturonase, PGA3 gene; PGA3; polygalacturonase.
ATH010820 AJ010820 1374bp mRNA PLN 23-SEP-1999
Arabidopsis thaliana mRNA for chloroplast FtsY homolog.
ftsY gene; FtsY homolog; ftsY; chloroplast FtsY homolog.
ATT18B16 AL021687 96574bp DNA PLN 23-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone T18B16 (ESSA project).
T18B16.70; putative protein; T18B16.80; kinase-like protein; T18B16.90;
T18B16.100; replication A protein-like; T18B16.110; hypothetical
protein; T18B16.120; ankyrin-like protein; T18B16.130; T18B16.140;
neoxanthin cleavage enzyme-like protein; T18B16.150; T18B16.160;
putatative protein; T18B16.170; T18B16.180; RNase L inhibitor-like
protein; T18B16.190; T18B16.200; cytochrome P450.
ATT9A21 AL021713 82697bp DNA PLN 23-SEP-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone T9A21 (ESSA project).
T9A21.10; DNA binding-like protein; T9A21.20; polygalacturonase-like
protein; T9A21.30; putative protein; T9A21.50; T9A21.60; T9A21.70;
T9A21.80; T9A21.90; starch synthase-like protein; T9A21.100; receptor
serine/threonine kinase-like protein; T9A21.110; unknown protein;
T9A21.120; T9A21.130; glycine-rich cell wall protein-like; T9A21.140;
potassium channel protein KAT2; T9A21.150; initiation
factor-2Bepsilon-like protein; T9A21.160; hypothetical protein;
T9A21.170; T9A21.180; translation initiation factor eIF-2 gamma
chain-like protein; T9A21.190; beta-1, 3-glucanase-like protein.
ATU87586 U87586 974bp mRNA PLN 24-SEP-1999
Arabidopsis thaliana decoy mRNA, complete cds.
decoy.
ATU89986 U89986 3604bp mRNA PLN 24-SEP-1999
Arabidopsis thaliana valyl tRNA synthetase (valRS) mRNA, complete cds.
valRS; valyl tRNA synthetase.
ATU93308 U93308 4552bp DNA PLN 24-SEP-1999
Arabidopsis thaliana decoy (DECOY) gene, complete cds and valyl tRNA
synthetase (valRS) gene, partial cds.
DECOY; decoy; valRS; valyl tRNA synthetase.
F6D8 AC008016 117737bp DNA PLN 18-SEP-1999
Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence.
HTG; F6D8.1; F6D8.2; F6D8.3; F6D8.4; F6D8.5; F6D8.6; F6D8.7; F6D8.8;
F6D8.9; F6D8.10; F6D8.11; F6D8.12; F6D8.13; F6D8.14; F6D8.15; F6D8.16;
F6D8.17; F6D8.18; F6D8.19; F6D8.20; F6D8.21; F6D8.22; F6D8.23; F6D8.24;
F6D8.25; F6D8.26; F6D8.27; F6D8.28; F6D8.29; F6D8.30; F6D8.31; F6D8.32;
F6D8.33; F6D8.34; F6D8.35; F6D8.36.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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