New Arabidopsis DNA 27-Sep-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Sep 27 20:40:31 EST 1999


====================== New DNA Sequences =======================

AB032412    AB032412     5719bp    DNA      PLN      21-SEP-1999
    Arabidopsis thaliana f-AtMBP gene for myrosinase binding protein, partial
     cds.
    myrosinase binding protein; f-AtMBP.

AC010704    AC010704   110456bp    DNA      HTG      23-SEP-1999
    Arabidopsis thaliana chromosome I clone TAMU-T5M16, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC010718    AC010718    96151bp    DNA      HTG      21-SEP-1999
    Arabidopsis thaliana chromosome I clone IGF-F28O16, WORKING DRAFT
     SEQUENCE, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC010793    AC010793    87220bp    DNA      HTG      23-SEP-1999
    Arabidopsis thaliana chromosome 1 clone F20B17, WORKING DRAFT SEQUENCE, 8
     unordered pieces.
    HTG; HTGS_PHASE1.

AC010795    AC010795   107551bp    DNA      HTG      23-SEP-1999
    Arabidopsis thaliana chromosome I clone IGF-F16M19, WORKING DRAFT
     SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC010796    AC010796    91160bp    DNA      HTG      24-SEP-1999
    Arabidopsis thaliana chromosome I clone IGF-F24J13, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC010797    AC010797    98069bp    DNA      HTG      23-SEP-1999
    Arabidopsis thaliana chromosome III clone IGF-F28J7, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC010852    AC010852    83951bp    DNA      HTG      24-SEP-1999
    Arabidopsis thaliana chromosome I clone TAMU-T12P18, WORKING DRAFT
     SEQUENCE, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC010870    AC010870    87412bp    DNA      HTG      25-SEP-1999
    Arabidopsis thaliana chromosome III clone TAMU-T13O15, WORKING DRAFT
     SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC010871    AC010871    81017bp    DNA      HTG      25-SEP-1999
    Arabidopsis thaliana chromosome III clone TAMU-T16O11, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF026167    AF026167     1217bp    mRNA     PLN      20-SEP-1999
    Arabidopsis thaliana ankyrin repeat protein EMB506 mRNA, complete cds.
    EMB506; ankyrin repeat protein EMB506.

AF055189    AF055189      675bp    DNA      PLN      19-SEP-1999
    Arabidopsis thaliana clone 1 pistillata gene, intron 1, partial sequence.
    pistillata.

AF055190    AF055190      673bp    DNA      PLN      19-SEP-1999
    Arabidopsis thaliana clone 2 pistillata gene, intron 1, partial sequence.
    pistillata.

AF162279    AF162279     2005bp    mRNA     PLN      24-SEP-1999
    Arabidopsis thaliana 10-formyltetrahydrofolate synthetase (THFS) mRNA,
     complete cds.
    THFS; 10-formyltetrahydrofolate synthetase.

AF181966    AF181966     1994bp    mRNA     PLN      20-SEP-1999
    Arabidopsis thaliana methylenetetrahydrofolate reductase MTHFR1 mRNA,
     complete cds.
    methylenetetrahydrofolate reductase MTHFR1.

AF181967    AF181967     1897bp    mRNA     PLN      20-SEP-1999
    Arabidopsis thaliana methylenetetrahydrofolate reductase MTHFR2 mRNA,
     complete cds.
    methylenetetrahydrofolate reductase MTHFR2.

ATH011048   AJ011048     3261bp    DNA      PLN      15-SEP-1999
    Arabidopsis thaliana eli5 gene, exons 1-11.
    eli5 gene; tyrosine decarboxylase; eli5.

ATH011049   AJ011049     1811bp    mRNA     PLN      15-SEP-1999
    Arabidopsis thaliana mRNA for tyrosine decarboxylase.
    eli5 gene; tyrosine decarboxylase; eli5.

ATH133786   AJ133786     3522bp    mRNA     PLN      15-SEP-1999
    Arabidopsis thaliana mRNA for gigantea protein.
    gi gene; gigantea protein; gi.

ATH242970   AJ242970      630bp    mRNA     PLN      17-SEP-1999
    Arabidopsis thaliana mRNA for BTF3b-like factor.
    btf3 gene; BTF3b-like factor; btf3.

==================== Updated DNA Sequences =====================

AC007633    AC007633    97876bp    DNA      PLN      21-SEP-1999
    Arabidopsis thaliana BAC T25P22 from chromosome 4, complete sequence.
    HTG; T25P22.10; calmodulin-domain protein kinase CDPK isoform 4 (CPK4);
     T25P22.20; putative protein; T25P22.30; weak similarity to hin1 protein
     - Nicotiana tabacum, PIR2:T03265; T25P22.40; giberellin-regulated
     protein GASA3 precursor; T25P22.50; T25P22.60; T25P22.70; T25P22.80;
     similarity to several hypothetical proteins- Arabidopsis thaliana;
     T25P22.90; H+-transporting ATP synthase-like protein.

AC009398    AC009398    94050bp    DNA      HTG      22-SEP-1999
    Arabidopsis thaliana chromosome 1 clone F20B24, WORKING DRAFT SEQUENCE, 4
     unordered pieces.
    HTG; HTGS_PHASE1.

AC009992    AC009992   105061bp    DNA      HTG      18-SEP-1999
    Arabidopsis thaliana chromosome III clone TAMU-T4P3, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC010556    AC010556    72347bp    DNA      HTG      23-SEP-1999
    Arabidopsis thaliana chromosome I clone TAMU-T18K17, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC010675    AC010675    90961bp    DNA      HTG      25-SEP-1999
    Arabidopsis thaliana chromosome I clone TAMU-T17F3, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC010676    AC010676    63556bp    DNA      HTG      22-SEP-1999
    Arabidopsis thaliana chromosome III clone TAMU-T22N4, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF176005    AF176005     2639bp    mRNA     PLN      21-SEP-1999
    Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1)
     mRNA, complete cds.
    AtMYB3R-1; putative c-myb-like transcription factor.

ATAC009326  AC009326    85561bp    DNA      PLN      25-SEP-1999
    Arabidopsis thaliana chromosome III P1 MZB10 genomic sequence, complete
     sequence.
    HTG; MZB10.1; putative signal peptidase; MZB10.2; Yippee-like protein;
     MZB10.3; MZB10.4; putative receptor ser/thr protein kinase; MZB10.5;
     MZB10.6; MZB10.7; MZB10.8; MZB10.9; MZB10.10; MZB10.11; MZB10.12;
     MZB10.13; putative mRNA capping enzyme, RNA guanylyltransferase;
     MZB10.14; MZB10.15; MZB10.16; MZB10.17; MZB10.18; MZB10.19; MZB10.20;
     MZB10.21; MZB10.22; MZB10.23; putative lectin; MZB10.24; putative 60S
     acidic ribosomal protein, 5' partial.

ATT5J17     AL035708   118267bp    DNA      PLN      21-SEP-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project).
    T5J17.10; putative protein; T5J17.20; T5J17.30; T5J17.40; T5J17.50;
     T5J17.60; small GTP-binding protein-like; T5J17.70; hypothetical
     protein; T5J17.80; ubiquitin-specific protease (AtUBP3); T5J17.90;
     T5J17.100; T5J17.110; adenosine-5'-phosphosulfate-kinase; T5J17.120;
     cytochrome P450-like protein; T5J17.130; DnaJ-like protein; T5J17.140;
     T5J17.150; 2-dehydro-3-deoxyphosphoheptonate aldolase; T5J17.160;
     GTP-binding protein GB3; T5J17.170; proliferating-cell nucleolar
     antigen-like protein; T5J17.180; putative serine/threonine protein
     kinase; T5J17.190; T5J17.200; histone H3.3; T5J17.210; Histon H3;
     T5J17.220; T5J17.230; homeodomain-like protein; T5J17.240; T5J17.250.

=========== Updated Sequence Features/Annotations  =============

AC008017    AC008017   116944bp    DNA      PLN      18-SEP-1999
    Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete
     sequence.
    HTG; F3N23.1; Putative threonine synthase; F3N23.2; F3N23.3;
     Transcription Factor; F3N23.4; Similar to disease resistance proteins;
     F3N23.5; Similar to part of downy mildew resistance protein RPP5;
     F3N23.6; Similar to downy mildew resistance protein RPP5; F3N23.7;
     Similar to disease resistance protein NL25; F3N23.8; F3N23.9; Similar to
     part of disease resistance protein; F3N23.10; F3N23.11; F3N23.12;
     F3N23.13; F3N23.14; Similar to NL27; F3N23.15; Similar to part of
     disease resistance protein RPP1-WsA; F3N23.16; Putative GTP-binding
     protein; F3N23.17; ACE; F3N23.18; F3N23.19; Similar to acid
     beta-galactosidase; F3N23.20; F3N23.21; F3N23.22; F3N23.23; Highly
     similar to developmental protein DG1118; F3N23.24; Similar to jacalin;
     F3N23.25; Similar to (R)-mandelonitrile lyase isoform 1 precursor;
     F3N23.26; F3N23.27; Highly similar to receptor-like protein kinase;
     F3N23.28; F3N23.29; F3N23.30; F3N23.31; Highly similar to
     ribulose-1,5-bisphosphate carboxylase/oxygenase activase; F3N23.32;
     F3N23.33; F3N23.34; F3N23.35; Highly similar to non intermediate
     filament IFA binding protein; F3N23.36.

AF059581    AF059581     1802bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana S-adenosyl-L-homocysteine hydrolase (SAHH) mRNA,
     complete cds.
    SAHH; S-adenosyl-L-homocysteine hydrolase.

AF132013    AF132013     1664bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana RING-H2 zinc finger protein ATL3 (ATL3) mRNA,
     complete cds.
    ATL3; RING-H2 zinc finger protein ATL3.

AF132014    AF132014     1499bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana RING-H2 zinc finger protein ATL4 (ATL4) mRNA,
     complete cds.
    ATL4; RING-H2 zinc finger protein ATL4.

AF132015    AF132015     1216bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana RING-H2 zinc finger protein ATL5 (ATL5) mRNA,
     complete cds.
    ATL5; RING-H2 zinc finger protein ATL5.

AF132016    AF132016     1386bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana RING-H2 zinc finger protein ATL6 (ATL6) mRNA,
     complete cds.
    ATL6; RING-H2 zinc finger protein ATL6.

AF132742    AF132742     2050bp    mRNA     PLN      21-SEP-1999
    Arabidopsis thaliana 3-phosphoinositide-dependent protein kinase-1 (PDK1)
     mRNA, complete cds.
    PDK1; 3-phosphoinositide-dependent protein kinase-1.

AF151646    AF151646     2331bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds.
    PC-MYB1.

AF151647    AF151647     1314bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana PC-MYB2 (PC-MYB2) mRNA, complete cds.
    PC-MYB2.

AF165429    AF165429     1947bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana protein phosphatase 2A 62 kDa B'' regulatory subunit
     mRNA, complete cds.
    protein phosphatase 2A 62 kDa B'' regulatory subunit.

AF167983    AF167983     1511bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana putative pyruvate dehydrogenase beta subunit mRNA,
     complete cds; nuclear gene encoding plastid protein.
    putative pyruvate dehydrogenase beta subunit.

AF170550    AF170550     5437bp    DNA      PLN      23-SEP-1999
    Arabidopsis thaliana germin-like protein 7 (GLP7) gene, complete cds.
    GLP7; germin-like protein 7.

ATEGP       X73222     1617bp    mRNA     PLN      24-SEP-1999
    A.thaliana mRNA for exopolygalacturonase.
    exopolygalacturonase.

ATEXOPA     X72291     1477bp    mRNA     PLN      24-SEP-1999
    A.thaliana (clone GBGe184) mRNA for exopolygalacturonase.
    exopolygalacturonase.

ATEXOPB     X72292     1652bp    mRNA     PLN      24-SEP-1999
    A.thaliana (clone GBGa483) mRNA for exopolygalacturonase.
    exopolygalacturonase.

ATF13C5     AL021711   119111bp    DNA      PLN      23-SEP-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project).
    F13C5.5; putative protein; F13C5.10; F13C5.20; hypothetical protein;
     F13C5.30; F13C5.40; heat shock transcription factor-like protein;
     F13C5.50; F13C5.60; F13C5.70; F13C5.80; major intrinsic protein
     (MIP)-like; F13C5.90; F13C5.100; cyclic phosphodiesterase; F13C5.110;
     cyclic phosphodiesterase-like protein; F13C5.120; protein kinase-like
     protein; F13C5.130; floral homeotic protein agamous; F13C5.140;
     F13C5.150; F13C5.160; xyloglucan endo-transglycosylase-like protein;
     F13C5.170; F13C5.180; 4-coumarate-CoA ligase-like; F13C5.190; F13C5.200;
     nodulin-26-like protein; F13C5.210; F13C5.220; F13C5.240; F13C5.230;
     cadmium-induced protein; F13C5.250; F13C5.260.

ATF18F4     AL021637    99725bp    DNA      PLN      23-SEP-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project).
    F18F4.5; putative protein, fragment; F18F4.6; putative protein; F18F4.10;
     hypothetical protein; F18F4.20; downy mildew resistance-like protein;
     F18F4.30; F18F4.40; F18F4.50; F18F4.60; potassium transporter-like
     protein; F18F4.70; F18F4.80; F18F4.90; F18F4.100; F18F4.110; F18F4.120;
     DAG-like protein; F18F4.130; F18F4.140; F18F4.150; F18F4.160; F18F4.170;
     hyuC-like protein; F18F4.180; Phosphoribosylanthranilate transferase;
     F18F4.190; membrane-associated salt-inducible-like protein; F18F4.200;
     F18F4.210; vacuolar sorting receptor-like protein; F18F4.220; F18F4.230;
     F18F4.240; leucine rich repeat-like protein (fragment).

ATF1C12     AL022224   111945bp    DNA      PLN      20-SEP-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSA project).
    F1C12.60; leucine rich repeat-like protein; F1C12.70; putative protein;
     F1C12.80; Glu-rich protein; F1C12.90; F1C12.100; retrotransposon like
     protein (fragment); F1C12.110; hypothetical protein; F1C12.120; terpene
     cyclase like protein; F1C12.130; cadinene synthase like protein;
     F1C12.140; F1C12.150; F1C12.160; cytochrome p450 like protein;
     F1C12.170; F1C12.180; endomembrane-associated protein; F1C12.190; CLV1
     receptor kinase like protein; F1C12.195; F1C12.200; F1C12.211;
     F1C12.220; F1C12.230; CTP synthase like protein.

ATF4I10     AL035525   111876bp    DNA      PLN      20-SEP-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F4I10 (ESSA project).
    F4I10.10; putative protein kinase; F4I10.20; aminopeptidase-like protein;
     F4I10.30; putative protein; F4I10.40; F4I10.50; F4I10.60; hypothetical
     protein; F4I10.70; F4I10.80; lysine-ketoglutarate
     reductase/saccharopine; F4I10.90; F4I10.100; F4I10.110; F4I10.120;
     F4I10.130; myosin-like protein; F4I10.140; F4I10.150;
     pectinesterase-like protein; F4I10.160; F4I10.170.

ATH005584   AJ005584     1350bp    mRNA     PLN      24-SEP-1999
    Arabidopsis thaliana mRNA for polygalacturonase.
    polygalacturonase, PGA3 gene; PGA3; polygalacturonase.

ATH010820   AJ010820     1374bp    mRNA     PLN      23-SEP-1999
    Arabidopsis thaliana mRNA for chloroplast FtsY homolog.
    ftsY gene; FtsY homolog; ftsY; chloroplast FtsY homolog.

ATT18B16    AL021687    96574bp    DNA      PLN      23-SEP-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T18B16 (ESSA project).
    T18B16.70; putative protein; T18B16.80; kinase-like protein; T18B16.90;
     T18B16.100; replication A protein-like; T18B16.110; hypothetical
     protein; T18B16.120; ankyrin-like protein; T18B16.130; T18B16.140;
     neoxanthin cleavage enzyme-like protein; T18B16.150; T18B16.160;
     putatative protein; T18B16.170; T18B16.180; RNase L inhibitor-like
     protein; T18B16.190; T18B16.200; cytochrome P450.

ATT9A21     AL021713    82697bp    DNA      PLN      23-SEP-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T9A21 (ESSA project).
    T9A21.10; DNA binding-like protein; T9A21.20; polygalacturonase-like
     protein; T9A21.30; putative protein; T9A21.50; T9A21.60; T9A21.70;
     T9A21.80; T9A21.90; starch synthase-like protein; T9A21.100; receptor
     serine/threonine kinase-like protein; T9A21.110; unknown protein;
     T9A21.120; T9A21.130; glycine-rich cell wall protein-like; T9A21.140;
     potassium channel protein KAT2; T9A21.150; initiation
     factor-2Bepsilon-like protein; T9A21.160; hypothetical protein;
     T9A21.170; T9A21.180; translation initiation factor eIF-2 gamma
     chain-like protein; T9A21.190; beta-1, 3-glucanase-like protein.

ATU87586    U87586      974bp    mRNA     PLN      24-SEP-1999
    Arabidopsis thaliana decoy mRNA, complete cds.
    decoy.

ATU89986    U89986     3604bp    mRNA     PLN      24-SEP-1999
    Arabidopsis thaliana valyl tRNA synthetase (valRS) mRNA, complete cds.
    valRS; valyl tRNA synthetase.

ATU93308    U93308     4552bp    DNA      PLN      24-SEP-1999
    Arabidopsis thaliana decoy (DECOY) gene, complete cds and valyl tRNA
     synthetase (valRS) gene, partial cds.
    DECOY; decoy; valRS; valyl tRNA synthetase.

F6D8        AC008016   117737bp    DNA      PLN      18-SEP-1999
    Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence.
    HTG; F6D8.1; F6D8.2; F6D8.3; F6D8.4; F6D8.5; F6D8.6; F6D8.7; F6D8.8;
     F6D8.9; F6D8.10; F6D8.11; F6D8.12; F6D8.13; F6D8.14; F6D8.15; F6D8.16;
     F6D8.17; F6D8.18; F6D8.19; F6D8.20; F6D8.21; F6D8.22; F6D8.23; F6D8.24;
     F6D8.25; F6D8.26; F6D8.27; F6D8.28; F6D8.29; F6D8.30; F6D8.31; F6D8.32;
     F6D8.33; F6D8.34; F6D8.35; F6D8.36.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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