New/Updated Arabidopsis DNA 01-Apr-2000

curator at arabidopsis.org curator at arabidopsis.org
Sat Apr 1 10:08:22 EST 2000


Dear Arabidopsis researchers,

The following information is the number of Arabidopsis entries in GenBank
that are new or were updated in the last week. These sequences have been
updated in TAIR and are available for searching using TAIR BLAST and FASTA
at:

http://arabidopsis.org/blast/

http://arabidopsis.org/cgi-bin/fasta/TAIRfasta.pl

New sequences      : 33
Updated sequences  : 0
Updated annotation : 18

====================== New DNA Sequences =======================

ATF7A7      AL161946    86690bp    DNA      PLN      23-MAR-2000
     Arabidopsis thaliana DNA chromosome 5, BAC clone F7A7 (ESSA project)
     Ca2+/H+ exchanger-like protein; F7A7_10; putative protein; F7A7_20;
      F7A7_30; F7A7_40; chlorophyll a/b-binding protein CP29; F7A7_50;
      receptor like protein kinase; F7A7_60; F7A7_70; F7A7_80; F7A7_90;
      F7A7_100; hypothetical protein; F7A7_110; ferritin 1 precursor;
      F7A7_120; F7A7_130; F7A7_140; F7A7_150; F7A7_160; light-inducible
      protein ATLS1; F7A7_170; F7A7_180; aldose reductase-like protein;
      F7A7_190; putative transporter protein; F7A7_200; F7A7_210; F7A7_220;
      F7A7_230; F7A7_240; F7A7_250.

AC026757    AC026757   113212bp    DNA      HTG      24-MAR-2000
     Arabidopsis thaliana chromosome I clone IGF-F2H10, *** SEQUENCING IN
      PROGRESS ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC026875    AC026875   114036bp    DNA      HTG      25-MAR-2000
     Arabidopsis thaliana chromosome 1 clone T6D22, *** SEQUENCING IN PROGRESS
      ***, 11 unordered pieces.
     HTG; HTGS_PHASE1.

AF241647    AF241647      342bp    DNA      PLN      27-MAR-2000
     Arabidopsis thaliana mutant flavonoid 3'hydroxylase gene, complete cds.
     mutant flavonoid 3'hydroxylase.

AC027032    AC027032    99824bp    DNA      HTG      26-MAR-2000
     Arabidopsis thaliana chromosome I clone IGF-F10O5, *** SEQUENCING IN
      PROGRESS ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

AC027033    AC027033    98895bp    DNA      HTG      26-MAR-2000
     Arabidopsis thaliana chromosome I clone IGF-F21N10, *** SEQUENCING IN
      PROGRESS ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC027034    AC027034   103390bp    DNA      HTG      26-MAR-2000
     Arabidopsis thaliana chromosome I clone IGF-F7A10, *** SEQUENCING IN
      PROGRESS ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

AC027035    AC027035    83493bp    DNA      HTG      26-MAR-2000
     Arabidopsis thaliana chromosome I clone TAMU-T16O9, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC027036    AC027036    68396bp    DNA      HTG      26-MAR-2000
     Arabidopsis thaliana chromosome I clone TAMU-T4M14, *** SEQUENCING IN
      PROGRESS ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AF241643S3  AF241645      171bp    DNA      PLN      27-MAR-2000
     Arabidopsis thaliana flavonoid 3'hydroxylase gene, exon 3.

AF241643S1  AF241643      450bp    DNA      PLN      27-MAR-2000
     Arabidopsis thaliana flavonoid 3'hydroxylase gene, exon 1.

AF241643S2  AF241644      441bp    DNA      PLN      27-MAR-2000
     Arabidopsis thaliana flavonoid 3'hydroxylase gene, exon 2.

AF241643S4  AF241646      480bp    DNA      PLN      27-MAR-2000
     Arabidopsis thaliana flavonoid 3'hydroxylase gene, exon 4 and complete
      cds.
     flavonoid 3'hydroxylase.

ATF16L2     AL162459   107285bp    DNA      PLN      27-MAR-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F16L2
     putative protein; F16L2_10; respiratory burst oxidase-like protein;
      F16L2_20; F16L2_30; DNA-binding protein-like; F16L2_40; F16L2_50;
      kinesin-related protein-like; F16L2_60; protein kinase-like; F16L2_70;
      F16L2_80; phospholipase-like protein; F16L2_90; F16L2_100; F16L2_110;
      F16L2_120; F16L2_130; Histone H4-like protein; F16L2_140; F16L2_150;
      F16L2_160; F16L2_170; F16L2_180; histone H2B; F16L2_190; actin
      depolymerising like protein; F16L2_200; actin depolymerizing factor 2;
      F16L2_210.

AF204677    AF204677     2340bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana guanylate kinase (AGK-1) gene, complete cds.
     AGK-1; guanylate kinase.

AF204874    AF204874     1038bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana conserved centromere sequence CCS1.

AF204875    AF204875     1198bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana conserved centromere sequence CCS2.

AF204876    AF204876     1955bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana conserved centromere sequence CCS3.

AF204877    AF204877      672bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana conserved centromere sequence CCS4.

AF204878    AF204878      713bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana conserved centromere sequence CCS5.

AF204879    AF204879     4691bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana conserved centromere sequence CCS6.

AF204880    AF204880      821bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana conserved centromere sequence CCS7.

ATF17C15    AL162506   102897bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana DNA chromosome 5, BAC clone F17C15 (ESSA project)
     putative protein; F17C15_10; F17C15_20; F17C15_30; cucumisin
      precursor-like protein; F17C15_40; monodehydroascorbate reductase
      (NADH)-like protein; F17C15_50; protein kinase-like protein; F17C15_60;
      1, 4-alpha-glucan branching enzyme protein soform SBE2.2 precursor;
      F17C15_70; F17C15_80; F17C15_90; GT2-like protein; F17C15_100;
      fructose-bisphosphate aldolase-like protein; F17C15_110; S-receptor
      kinase-like protein; F17C15_120; F17C15_130; heat shock transcription
      factor-like protein; F17C15_140; SERINE/THREONINE-PROTEIN KINASE CTR1;
      F17C15_150; histone deacetylase-like protein; F17C15_160; hypothetical
      protein; F17C15_170; F17C15_180; 3-deoxy-D-manno-octulosonic acid
      transferase-like protein; F17C15_190; myb-like protein; F17C15_200;
      homeodomain-like protein; F17C15_210.

ATT12C14    AL162507    77720bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14
     ATP-dependent RNA helicase-like protein; T12C14_10; putative protein;
      T12C14_20; T12C14_30; T12C14_40; T12C14_50; T12C14_60; T12C14_70;
      T12C14_80; T12C14_90; cytochrome c oxidase subunit 5c-like protein;
      T12C14_100; CP12 protein precursor-like protein; T12C14_110; bZIP
      transcription factor-like protein; T12C14_120; T12C14_130; T12C14_140;
      T12C14_150; T12C14_160; T12C14_170; T12C14_180; T12C14_190; T12C14_200;
      T12C14_210; T12C14_220; T12C14_230; T12C14_240.

ATT7H20     AL162508    87581bp    DNA      PLN      28-MAR-2000
     Arabidopsis thaliana DNA chromosome 5, BAC clone T7H20 (ESSA project)
     hypothetical protein; T7H20_10; putative protein; T7H20_20; T7H20_30;
      T7H20_40; T7H20_50; T7H20_60; T7H20_70; putative homeodomain protein;
      T7H20_80; T7H20_90; T7H20_100; T7H20_110; putative protein kinase;
      T7H20_120; T7H20_130; T7H20_140; T7H20_150; T7H20_160; one helix protein
      (OHP); T7H20_170; T7H20_180; thaumatin-like protein; T7H20_190;
      T7H20_200; T7H20_210; T7H20_220; T7H20_230; T7H20_240; T7H20_250;
      T7H20_260; T7H20_270; T7H20_280; T7H20_290.

AF193616    AF193616     1743bp    mRNA     PLN      29-MAR-2000
     Arabidopsis thaliana N-myristoyltransferase 1 (NMT1) mRNA, complete cds.
     NMT1; N-myristoyltransferase 1.

AC027134    AC027134   119469bp    DNA      HTG      28-MAR-2000
     Arabidopsis thaliana chromosome I clone F13B4, *** SEQUENCING IN PROGRESS
      ***, 14 unordered pieces.
     HTG; HTGS_PHASE1.

AC027135    AC027135    81722bp    DNA      HTG      28-MAR-2000
     Arabidopsis thaliana chromosome I clone TAMU-T8E3, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

ATF23N14    AL138638    83442bp    DNA      PLN      29-MAR-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F23N14
     nodulin-like protein; F23N14_10; putative protein; F23N14_20; F23N14_30;
      F23N14_40; amine oxidase-like protein; F23N14_50; F23N14_60; F23N14_70;
      F23N14_80; F23N14_90.

ATF26K9     AL162651   110257bp    DNA      PLN      29-MAR-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9
     putative protein; F26K9_10; F26K9_20; F26K9_30; putative transcription
      factor MYB11; F26K9_40; hypothetical protein; F26K9_50; F26K9_60;
      F26K9_70; F26K9_80; F26K9_90; F26K9_100; proline-rich protein;
      F26K9_110; RING-H2 zinc finger protein ATL5; F26K9_120; ABC
      transporter-like protein; F26K9_130; beta-D-glucan exohydrolase-like
      protein; F26K9_140; alpha galactosyltransferase-like protein; F26K9_150;
      F26K9_160; beta-glucosidase-like protein; F26K9_170; F26K9_180;
      Glutathione transferase III-like protein; F26K9_190; F26K9_200; shock
      protein SRC2-like; F26K9_210; F26K9_220; F26K9_230; F26K9_240;
      F26K9_250; dTDP-glucose 4-6-dehydratase homolog D18; F26K9_260; small
      nuclear ribonucleoprotein-like protein; F26K9_270; F26K9_280; F26K9_290;
      60S RIBOSOMAL PROTEIN L7A protein; F26K9_300; F26K9_310; F26K9_320;
      F26K9_330.

ATT28A8     AL162691    97371bp    DNA      PLN      29-MAR-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone T28A8
     lipid-transfer-like protein; T28A8_10; putative protein; T28A8_20;
      leucine-rich repeat protein LRP-like; T28A8_30; T28A8_40; T28A8_50;
      T28A8_60; T28A8_70; transporter-like protein; T28A8_80; glutathione
      transferase-like protein; T28A8_90; calmodulin 7; T28A8_100; T28A8_110;
      T28A8_120; T28A8_130; T28A8_140; cellulase-like protein; T28A8_150.

ATF12E4     AL162751   121552bp    DNA      PLN      30-MAR-2000
     Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project)
     EIN2; F12E4_10; 3-isopropylmalate dehydrogenase-like protein; F12E4_20;
      adenosine kinase-like protein; F12E4_30; putative protein; F12E4_40;
      protein kinase-like; F12E4_50; F12E4_60; transitional endoplasmic
      reticulum ATPase; F12E4_70; F12E4_80; F12E4_90; F12E4_100; F12E4_110;
      farnesylated protein-like; F12E4_120; F12E4_130; F12E4_140;
      histidyl-tRNA synthetase-like protein; F12E4_150; transcription
      factor-like protein; F12E4_160; F12E4_170; F12E4_190; anthranilate
      phosphoribosyltransferase-like protein; F12E4_180; F12E4_200; F12E4_210;
      F12E4_220; F12E4_230; AtB'alpha regulatory subunit of PP2A; F12E4_240;
      F12E4_250; UDPG glucosyltransferase-like protein; F12E4_260; F12E4_280;
      transcriptional co-activator-like protein; F12E4_270; F12E4_290;
      GTP-binding protein-like; F12E4_300; AtRab GTP-binding protein;
      F12E4_310; F12E4_320; F12E4_330; F12E4_340; uracil transporter-like
      protein; F12E4_350; F12E4_360; transporter like protein; F12E4_370.

ATT20L15    AL162351    96565bp    DNA      PLN      30-MAR-2000
     Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project)
     putative protein; T20L15_10; T20L15_20; T20L15_30; T20L15_40; T20L15_50;
      T20L15_60; T20L15_70; serine/threonine protein kinase ATPK10; T20L15_80;
      T20L15_90; T20L15_100; T20L15_110; protein kinase ATN1-like protein;
      T20L15_120; putative zinc finger protein; T20L15_130; lipid-transfer
      protein-like; T20L15_140; T20L15_150; T20L15_160; T20L15_170;
      hypothetical protein; T20L15_180; T20L15_190; (1-4)-beta-mannan
      endohydrolase-like protein; T20L15_200; translation initiation factor
      eIF-2 beta chain-like protein; T20L15_210; T20L15_220.


=========== Updated Sequence Features/Annotations  =============

ATBCBG      Z15058     2920bp    DNA      PLN      30-MAR-2000
     Arabidopsis thaliana bcb gene for blue copper-binding protein
     blue copper-binding protein; bcb.

ATT10I14    AL021712    82891bp    DNA      PLN      23-MAR-2000
     Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project)
     putative protein; AT4g22150; AT4g22160; AT4g22170; AT4g22180;
      hypothetical protein; AT4g22190; potassium channel protein AKT3;
      AT4g22200; AT4g22210; nifU-like protein; AT4g22220; AT4g22230; fibrillin
      precursor-like protein; AT4g22240; AT4g22250; AT4g22260; AT4g22270;
      AT4g22280; AT4g22290; AT4g22300; AT4g22310; AT4g22320; AT4g22330;
      CDP-diacylglycerol synthetase-like protein; AT4g22340; AT4g22350;
      AT4g22360; AT4g22370.

ATT1P17     AL049730   137519bp    DNA      PLN      23-MAR-2000
     Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
     putative pollen-specific protein; AT4g12420; putative
      trehalose-6-phosphate phosphatase (AtTPPA); AT4g12430; putative adenine
      phosphoribosyltransferase; AT4g12440; putative protein; AT4g12450;
      putative SWH1 protein; AT4g12460; pEARLI 1-like protein; AT4g12470;
      pEARLI 1; AT4g12480; AT4g12490; AT4g12500; AT4g12510; AT4g12520;
      AIR1A-like protein; AT4g12530; hypothetical protein; AT4g12540; putative
      cell wall-plasma membrane disconnecting CLCT protein (AIR1A); AT4g12550;
      AT4g12560; polyubiquitin-like protein; AT4g12570; AT4g12580; AT4g12590;
      Ribosomal protein L7Ae-like; AT4g12600; AT4g12610; origin recognition
      complex subunit 1-like protein; AT4g12620; AT4g12630; AT4g12640;
      AT4g12650.

AB021263    AB021263     7037bp    PLN      25-MAR-2000
     Arabidopsis thaliana copia-like retrotransposon AtRE1 gene for
      polyprotein, complete cds, strain Columbia.
     copia-like retrotransposon AtRE1 polyprotein; polyprotein.

AB021264    AB021264     7989bp    DNA      PLN      25-MAR-2000
     Arabidopsis thaliana copia-like retrotransposon AtRE2 gene for
      polyprotein, complete cds.
     copia-like retrotransposon AtRE2 polyprotein; polyprotein; AtRE2.

AB021265    AB021265     7405bp    DNA      PLN      25-MAR-2000
     Arabidopsis thaliana copia-like retrotransposon AtRE1 gene for
      polyprotein, complete cds, strain Landsberg erecta.
     copia-like retrotransposon AtRE1 polyprotein; polyprotein; AtRE1.

AB021266    AB021266     7281bp    DNA      PLN      25-MAR-2000
     Arabidopsis thaliana copia-like retrotransposon AtRE2-1 gene for
      polyprotein, complete cds.
     copia-like retrotransposon AtRE2-1 polyprotein; polyprotein; AtRE2-1.

AB021267    AB021267     7342bp    DNA      PLN      25-MAR-2000
     Arabidopsis thaliana copia-like retrotransposon AtRE2-2 gene for
      polyprotein, complete cds.
     copia-like retrotransposon AtRE2-2 polyprotein; polyprotein; AtRE2-2.

AC015447    AC015447   108365bp    DNA      PLN      29-MAR-2000
     F24J8, complete sequence.
     HTG.

AC021044    AC021044   122483bp    DNA      PLN      29-MAR-2000
     F3H9, complete sequence.
     HTG.

AC021043    AC021043   154716bp    DNA      PLN      29-MAR-2000
     F28N24, complete sequence.
     HTG.

AC025294    AC025294   155053bp    DNA      HTG      24-MAR-2000
     Arabidopsis thaliana chromosome I clone IGF-F19C24, *** SEQUENCING IN
      PROGRESS ***, 8 unordered pieces.
     HTG; HTGS_PHASE1.

AC025781    AC025781   113705bp    DNA      HTG      29-MAR-2000
     Arabidopsis thaliana chromosome I clone IGF-F15C21, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC025782    AC025782    99050bp    DNA      HTG      29-MAR-2000
     Arabidopsis thaliana chromosome I clone TAMU-T15P17, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC025808    AC025808   119742bp    DNA      HTG      29-MAR-2000
     Arabidopsis thaliana chromosome 1 clone F18O14, *** SEQUENCING IN
      PROGRESS ***, 2 ordered pieces.
     HTG; HTGS_PHASE2.

AC025814    AC025814    97152bp    DNA      HTG      28-MAR-2000
     Arabidopsis thaliana chromosome I clone IGF-F22H5, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC025815    AC025815    74525bp    DNA      HTG      28-MAR-2000
     Arabidopsis thaliana chromosome I clone TAMU-T8D8, *** SEQUENCING IN
      PROGRESS ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC026480    AC026480    91027bp    DNA      HTG      29-MAR-2000
     Arabidopsis thaliana chromosome I clone IGF-F15E12, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

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