New/Updated Arabidopsis DNA 29-Apr-2000

curator at arabidopsis.org curator at arabidopsis.org
Sat Apr 29 09:31:40 EST 2000


Dear Arabidopsis researchers,

The following information is the number of Arabidopsis entries in GenBank
that are new or were updated in the last week. These sequences have been
updated in TAIR and are available for searching using TAIR BLAST and FASTA
at:

http://arabidopsis.org/blast/

http://arabidopsis.org/cgi-bin/fasta/TAIRfasta.pl

New sequences      : 8
Updated sequences  : 0
Updated annotation : 61

====================== New DNA Sequences =======================

AB041530    AB041530     1880bp    mRNA     PLN      15-APR-2000
     Arabidopsis thaliana APRR1 mRNA for pseudo-response regulator 1, complete
      cds.
     pseudo-response regulator 1; APRR1.

AB041531    AB041531     1490bp    mRNA     PLN      15-APR-2000
     Arabidopsis thaliana APRR2 mRNA for pseudo-response regulator 2, complete
      cds.
     pseudo-response regulator 2; APRR2.

AB041532    AB041532     1400bp    mRNA     PLN      15-APR-2000
     Arabidopsis thaliana ARR11 mRNA for response regulator 11, complete cds.
     response regulator 11; ARR11.

AB041766    AB041766      420bp    mRNA     PLN      20-APR-2000
     Arabidopsis thaliana AHP4 mRNA for HPt phosphotransmitter, complete cds.
     AHP4; HPt phosphotransmitter.

AB041767    AB041767      510bp    mRNA     PLN      20-APR-2000
     Arabidopsis thaliana AHP5 mRNA for HPt phosphotransmitter, complete cds.
     AHP5; HPt phosphotransmitter.

ATF14L2     AL353818   107027bp    DNA      PLN      20-APR-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F14L2
     bZIP transcription factor-like protein; F14L2_10; putative protein;
      F14L2_20; disease resistance protein-like; F14L2_30; F14L2_40; F14L2_50;
      F14L2_60; F14L2_70; WD repeat domain protein; F14L2_80; acyl CoA
      reductase-protein; F14L2_90; acyl CoA reductase-like protein; F14L2_100;
      F14L2_110; F14L2_120; F14L2_130; acidic ribosomal protein P2-like;
      F14L2_140; F14L2_150.

ATF26G5     AL353814   102873bp    DNA      PLN      20-APR-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F26G5
     putative protein; F26G5_10; F26G5_20; F26G5_30; F26G5_40; F26G5_50; dnaJ
      protein homolog atj3; F26G5_60; F26G5_70; F26G5_80; valine-rich protein;
      F26G5_90; F26G5_100; F26G5_110; F26G5_120; F26G5_130; F26G5_140; protein
      kinase-like protein; F26G5_150; hypothetical protein; F26G5_160.

AC061957    AC061957    89904bp    DNA      HTG      21-APR-2000
     Arabidopsis thaliana chromosome 1 clone F22L4, *** SEQUENCING IN PROGRESS
      ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.


=========== Updated Sequence Features/Annotations  =============

D89341      D89341     4484bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for luminal binding protein, complete cds.
     BiP; luminal binding protein.

D89342      D89342     4631bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for luminal binding protein, complete cds.
     BiP; luminal binding protein.

D83511      D83511     3664bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for ATMYC1, complete cds.
     ATMYC1; Atmyc1.

D89620      D89620     4920bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for glutathione reductase, complete cds.
     glutathione reductase; glutathione reductase precursor.

AB003522    AB003522     1192bp    ds-DNA   PLN      15-APR-2000
     Arabidopsis thaliana leucoplast genes for larger subunit of Rubisco, beta
      subunit of coupling factor one, partial cds.
     beta subunit of coupling factor one; atpB; larger subunit of Rubisco;
      rbcL.

AB003590    AB003590     5045bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for sulfate transporter, complete cds.
     sulfate transporter.

D86932      D86932     1619bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DNA for terminal flower1, complete cds.
     terminal flower1.

D87130      D87130     1172bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DNA for terminal flower1, complete cds.
     terminal flower1.

D87519      D87519     1172bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DNA for terminal flower1, complete cds.
     terminal flower1.

D86608      D86608     5796bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DNA for inorganic phosphate transporter, complete
      cds.
     Inorganic phosphate transporter; PHT1.

D11352      D11352     6533bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DNA for CCT alpha/TCP-1, complete cds.
     CCT alpha/TCP-1.

AB004872    AB004872     2484bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DNA for COR47, complete cds.
     COR47; rd17.

AB010407    AB010407     7087bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DNA for phosphoglycerate dehydrogenase, complete
      cds.
     phosphoglycerate dehydrogenase.

AB008855    AB008855     3156bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana PED1 gene for 3-ketoacyl-CoA thiolase, complete cds.
     3-ketoacyl-CoA thiolase; PED1.

AB008856    AB008856     3157bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana gene for mutated 3-ketoacyl-CoA thiolase, complete
      cds.
     mutated 3-ketoacyl-CoA thiolase; ped1.

AB016570    AB016570     3260bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DREB2A gene, complete cds.
     DREB2A.

AB016571    AB016571     3646bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DREB2B gene, complete cds.
     DREB2B.

AB022891    AB022891     3873bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DNA for glucose-1-phosphate adenylyltransferase,
      complete cds.
     adg2; glucose-1-phosphate adenylyltransferase.

AB030586    AB030586     4557bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana AATL1 gene for amino acid transporter-like protein
      1, complete cds.
     amino acid transporter-like protein 1; AATL1.

AB022784    AB022784     3492bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana gene for delta1-pyrroline-5-carboxylate synthetase
      1, partial cds.
     AtP5CS1; delta1-pyrroline-5-carboxylate synthetase 1.

AB033294    AB033294     6468bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana DFR gene for dihydroflavonol 4-reductase, complete
      cds.
     DFR; dihydroflavonol 4-reductase.

AF177989    AF177989      870bp    mRNA     PLN      21-APR-2000
     Arabidopsis thaliana alpha-soluble NSF attachment protein (aSNAP) mRNA,
      complete cds.
     alpha-soluble NSF attachment protein; aSNAP.

AF177990    AF177990      876bp    mRNA     PLN      21-APR-2000
     Arabidopsis thaliana gamma-soluble NSF attachment protein (gSNAP) mRNA,
      complete cds.
     gamma-soluble NSF attachment protein; gSNAP.

AB039889    AB039889     5118bp    DNA      PLN      14-APR-2000
     Arabidopsis thaliana aps1 gene for glucose-1-phosphate
      adenylyltransferase, complete cds.
     aps1; glucose-1-phosphate adenylyltransferase.

AC035249    AC035249   110995bp    DNA      HTG      21-APR-2000
     Arabidopsis thaliana chromosome I clone IGF-F8D11, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

ATHITA0I    D84248     2395bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Ita-0 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHMTLP     D11394     1635bp    ds-DNA   PLN      14-APR-2000
     A. thaliana gene for metallothionein-like protein, complete cds.
     chlorosis induced by iron-deficiency; cysteine rich; heavy metal-binding;
      metallothionein-like protein; AtMT-1G.

ATHMYB      D10936 D01155     2923bp    ds-DNA   PLN      14-APR-2000
     A.thaliana gene encording myb homologue, complete cds.
     DNA-binding protein; myb-related gene; proto-oncogene; ATMYB1 protein;
      atmyb1.

ATHNIR      D14824 D13812     4380bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana gene for nitrite reductase, complete cds.
     nitrite reductase.

ATHPK5      D10909     4059bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana gene for serine/threonine protein kinase, complete
      cds.
     serine/threonine protein kinase.

ATHA10A     D84240     2413bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Al-0 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHACC1     D34631     1084bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana acc1 gene for acetyl-CoA carboxylase (ACC1), partial
      cds (exon1-5).
     ACC1; acc1; acetyl-CoA carboxylase.

ATHAPX1     D14442 X70220     3050bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for ascorbate peroxidase.
     ascorbate peroxidase; APX1.

ATHRD19A    D13042     3255bp    ds-DNA   PLN      14-APR-2000
     A.thaliana rd19A gene for thiol protease, exon 1, exon 2 and exon 3.
     thiol protease; rd19A.

ATHRD21A    D13043     4161bp    ds-DNA   PLN      14-APR-2000
     A.thaliana rd21A gene for thiol protease, complete cds.
     thiol protease; rd21A.

D13044      D13044     8048bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for RD29B, RD29A, complete cds.
     RD29A; RD29B; rd29B; rd29A.

ATHARLIM15  D45415     5135bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana ArLIM15 gene for recA-like protein, complete cds
      (exon1-15).
     ArLIM15; rceA-like protein; recA-like protein.

ATHYO0J     D84249     2413bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Yo-0 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHATMYB2   D14712     2521bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana Atmyb2 gene, complete cds.
     ATMYB2; transcription factor; Atmyb2.

ATHATPK     D10910     4719bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana Atpk7 gene for serine/threonine protein kinase,
      complete cds.
     plant protein kinase; serine/threonine protein kinase; Atpk7.

ATHATSA1    D00672     4008bp    ds-DNA   PLN      14-APR-2000
     A.thaliana ATS1 gene for glycerol-3-phosphate acyltransferase.
     ATS1; acyltransferase; glycerol-3-phosphate acyltransferase.

ATHB11B     D84241     2411bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Bl-1 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHBLA10C   D84242     2392bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Bla-10 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHBS0D     D84243     2413bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Bs-0 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHCDC2A    D10850     3479bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana CDC2a gene for p34 protein serine/threonine kinase.
     protein kinase; serine/threonine kinase; p32 protein serine/threonine
      kinase; CDC2a.

ATHCDC2BG   D10851     2611bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana CDC2b gene for p34 protein serine/threonine
      kinase-related protein.
     protein kinase; serine/threonine kinase; p32 protein serine/threonine
      kinase-related protein; CDC2b.

ATHCHI0E    D84244     2412bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Chi-0 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHCI0F     D84245     2389bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Ci-0 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHCP29A    D31710     4032bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana gene for chloroplast RNA-binding protein cp29,
      complete cds (exon1, exon2, exon3, exon4).
     chloroplast RNA-binding protein; cp29; ribonucleoprotein; single-stranded
      nucleic acid-binding.

ATHCP31C    D31712     4135bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana gene for chloroplast RNA-binding protein cp31,
      complete cds (exon1, exon2, exon3, exon4).
     chloroplast RNA-binding protein; cp31; ribonucleoprotein; single-stranded
      nucleic acid-binding.

ATHCP33E    D31714     3329bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana gene for chloroplast RNA-binding protein cp33,
      complete cds (exon1, exon2, exon3, exon4).
     chloroplast RNA-binding protein; cp33; ribonucleoprotein; single-stranded
      nucleic acid-binding.

ATHCP33F    D31715     1066bp    ss-mRNA  PLN      14-APR-2000
     Arabidopsis thaliana mRNA for chloroplast RNA-binding protein cp33,
      partial cds.
     chloroplast RNA-binding protein; cp33; ribonucleoprotein; single-stranded
      nucleic acid-binding.

ATHDCECAA   D13984     4667bp    ds-DNA   PLN      14-APR-2000
     A. thaliana ACA1 gene for chloroplast envelope Ca2+-ATPase, complete cds.
     Ca2+-ATPase; chloroplast envelope Ca2+-ATPase; chloroplast envelope
      Ca2+-ATPase precursor; ACA1; 'chloroplast envelope Ca2+-ATPase'.

ATHES0G     D84246     2412bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Es-0 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHFAD3     D26508     4250bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana fad3 gene for microsomal omega-3 fatty acid
      desaturase, complete cds.
     fad3; microsomal omega-3 fatty acid desaturase.

ATHFAD7     D14007     2569bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana fad7 gene for omega-3-desaturase, complete cds.
     fad7 gene; omega-3 fatty acid desaturase; omega-3-desaturase; fad7.

ATHGR1H     D84247     2411bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana isolate Gr-1 Adh gene for alcohol dehydrogenase,
      complete cds.
     Adh; alcohol dehydrogenase.

ATHER       D83257     9295bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for receptor protein kinase, complete cds.
     extra-cellular leucine-rich repeats; receptor protein kinase; ER.

ATHGVPE     D61395     5746bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana DNA for gamma-VPE, complete cds.
     gamma-VPE.

ATHAPETALA  D21125     2963bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana gene for APETALA3, complete cds.
     APETALA3.

ATHRD22     D10703 D01113     3499bp    ds-DNA   PLN      14-APR-2000
     Arabidopsis thaliana rd22 gene, complete cds.
     dehydration inducible protein; rd22.

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