New/Updated Arabidopsis DNA 05-Feb-2000

curator at arabidopsis.org curator at arabidopsis.org
Sat Feb 5 09:54:29 EST 2000


Dear Arabidopsis researchers,

The following information is the number of Arabidopsis entries in GenBank
that are new or were updated in the last week. These sequences have been
updated in TAIR and are available for searching using TAIR BLAST and FASTA
at:

http://arabidopsis.org/blast/

http://arabidopsis.org/cgi-bin/fasta/TAIRfasta.pl

New sequences      : 14932
Updated sequences  : 0
Updated annotation : 45

=========== Updated Sequence Features/Annotations  =============

MIATGENA    Y08501   200000bp    DNA      Circular PLN
     A.thaliana mitochondrial genome, part A
     18S ribosomal RNA; 26S ribosomal RNA; 5S ribosomal RNA; ATPase subunit 1;
      ATPase subunit 6; ATPase subunit 9; NADH dehydrogenase subunit 1; NADH
      dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH
      dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH
      dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH
      dehydrogenase subunit 7; NADH dehydrogenase subunit 9; ORF25; RNA
      editing; apocytochrome B; atp1 gene; atp6 gene; atp9 gene; ccb203 gene;
      ccb206 gene; ccb256 gene; ccb382 gene; ccb452 gene; cob gene; cox1 gene;
      cox2 gene; cox3 gene; cytochrome c biogenesis orf203; cytochrome c
      biogenesis orf206; cytochrome c biogenesis orf256; cytochrome c
      biogenesis orf382; cytochrome c biogenesis orf452; cytochrome c oxidase
      subunit 1; cytochrome c oxidase subunit 2; cytochrome c oxidase subunit
      3; matR gene; maturase; nad1 gene; nad2 gene; nad3 gene; nad4 gene;
      nad4L gene; nad5 gene; nad6 gene; nad7 gene; nad9 gene; orf25 gene;
      orfB; orfB gene; orfX gene; ribosomal protein L16; ribosomal protein L2;
      ribosomal protein L5; ribosomal protein S12; ribosomal protein S3;
      ribosomal protein S4; ribosomal protein S7; rpl16 gene; rpl2 gene; rpl5
      gene; rps12 gene; rps3 gene; rps4 gene; rps7 gene; rrn18 gene; rrn28
      gene; rrn5 gene; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys;
      transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His;
      transfer RNA-Ile; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Pro;
      transfer RNA-Ser; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-fMet;
      trnC gene; trnD gene; trnE gene; trnG gene; trnH gene; trnI gene; trnK
      gene; trnM gene; trnN gene; trnP gene; trnQ gene; trnS gene; trnW gene;
      trnY gene; trnfM gene; nad2; 26S ribosomal protein; rrn26; nad5; nad9;
      rpl16; rps3; tRNA-Lys; ccb206; cox2; ccb452; tRNA-Gly; rpl5; cob;
      tRNA-Ser; tRNA-fMet; nad6; rps4; tRNA-Tyr; tRNA-Pro; tRNA-Cys; tRNA-Asn;
      atp6-1; tRNA-Ile; nad7; nad1; matR; rpl2; orfX; nad4; orf25; nad4L.

D89620      D89620     4920bp    ds-DNA   PLN      01-FEB-2000
     Arabidopsis thaliana DNA for glutathione reductase, complete cds.
     glutathione reductase; glutathione reductase precursor.

ATAC002342  AC002342    82359bp    DNA      PLN      01-FEB-2000
     Arabidopsis thaliana chromosome V BAC T19K24 genomic sequence, complete
      sequence.
     HTG; putative Mutator-like transposase, 3' partial; T19K24.1; T19K24.2;
      putative disease resistance protein; T19K24.3; T19K24.4; T19K24.5;
      putative polygalacturonase; T19K24.6; T19K24.7; T19K24.8; human Mi-2
      autoantigen-like protein; T19K24.18; ATP dependent copper transporter
      (RAN1); T19K24.10; T19K24.11; similar to pMS10 protein; T19K24.12;
      T19K24.13; putative C2 domain-containing protein; T19K24.14; T19K24.15;
      similar to DNA-damage-inducible protein P; T19K24.16; Dreg-2 like
      protein; T19K24.17.

AF049236    AF049236    60000bp    DNA      PLN      27-JAN-2000
     Arabidopsis thaliana putative transmembrane protein G1p (AtG1), putative
      nuclear DNA-binding protein G2p (AtG2), Em1 protein (ATEM1), putative
      chlorophyll synthetase (AtG4), putative transmembrane protein G5p
      (AtG5), putative acyl-coA dehy...(see COMMENT)
     hypothetical protein; AtG1; putative transmembrane protein G1p; putative
      nuclear DNA-binding protein G2p; AtG2; Em1 protein; ATEM1; AtG4;
      putative chlorophyll synthetase; putative transmembrane protein G5p;
      AtG5; putative acyl-coA dehydrogenase Gp6; AtG6; putative acyl-coA
      dehydrogenase; calcium dependent protein kinase.

AC006423    AC006423   131693bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone F28H19, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC007152    AC007152    87918bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone F1O19, *** SEQUENCING IN PROGRESS
      ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC007797    AC007797   114147bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone F6F9, *** SEQUENCING IN PROGRESS
      ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC008046    AC008046    94640bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone F5A13, *** SEQUENCING IN PROGRESS
      ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC008051    AC008051    87889bp    DNA      HTG      29-JAN-2000
     Arabidopsis thaliana chromosome 1 clone F19C14, *** SEQUENCING IN
      PROGRESS ***, 2 ordered pieces.
     HTG; HTGS_PHASE2.

ATF4F15     AL049711   123209bp    DNA      PLN      27-JAN-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15
     sulfate transporter (ATST1); F4F15.10; putative heat shock transcription
      factor; F4F15.20; putative calmodulin; F4F15.30; putative protein;
      F4F15.40; F4F15.50; F4F15.60; F4F15.70; hypothetical protein; F4F15.80;
      F4F15.90; putative serine/threonine protein kinase; F4F15.100;
      serine-type carboxypeptidase like protein; F4F15.110; F4F15.120;
      F4F15.130; F4F15.140; F4F15.150; F4F15.160; F4F15.170; F4F15.180;
      F4F15.190; DNA-directed RNA polymerase II 13.6K chain; F4F15.200;
      F4F15.210; F4F15.220; gamma response I protein; F4F15.230; 5B protein
      like protein; F4F15.240; F4F15.250; F4F15.260; beta-ketoacyl-CoA
      synthase like protein; F4F15.270; F4F15.280; F4F15.290; F4F15.300;
      dihydrolipoamide S-acetyltransferase precursor; F4F15.310; F4F15.320;
      F4F15.330; F4F15.340.

T20M3       AC009999    79554bp    DNA      PLN      01-FEB-2000
     Sequence of BAC T20M3 from Arabidopsis thaliana chromosome 1, complete
      sequence.
     HTG; T20M3.1; T20M3.2; T20M3.3; T20M3.4; T20M3.5; T20M3.6; T20M3.7;
      T20M3.8; T20M3.9; T20M3.10; T20M3.11; T20M3.12; T20M3.13; T20M3.14;
      T20M3.15; T20M3.16; T20M3.17; T20M3.18; T20M3.19; T20M3.20; T20M3.21.

AC011810    AC011810    99345bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone T6J4, *** SEQUENCING IN PROGRESS
      ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

AC011808    AC011808    93559bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone F19K19, *** SEQUENCING IN
      PROGRESS ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC012187    AC012187    94902bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome 1 clone F13K23, *** SEQUENCING IN
      PROGRESS ***, 2 ordered pieces.
     HTG; HTGS_PHASE2.

AF192490    AF192490      761bp    mRNA     PLN      02-FEB-2000
     Arabidopsis thaliana cyclophilin (ROC7) mRNA, complete cds.
     ROC7; cyclophilin.

AC013427    AC013427   100633bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome 1 clone T1K7, *** SEQUENCING IN PROGRESS
      ***, 2 ordered pieces.
     HTG; HTGS_PHASE2.

ATF15G16    AL132959   104868bp    DNA      PLN      31-JAN-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F15G16
     exonuclease RRP41; F15G16.10; putative protein; F15G16.20; F15G16.30;
      TUBULIN GAMMA-1 CHAIN; F15G16.40; hypothetical protein; F15G16.50;
      F15G16.60; F15G16.70; F15G16.80; F15G16.90; F15G16.100; F15G16.110;
      F15G16.120; F15G16.130; F15G16.140; dynamin-like protein; F15G16.150;
      F15G16.160; F15G16.170; seven in absentia-like protein; F15G16.180;
      F15G16.190; F15G16.200; F15G16.210; auxin response factor-like protein;
      F15G16.220.

ATF24B22    AL132957   100285bp    DNA      PLN      28-JAN-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F24B22
     fructose-bisphosphatase precursor; F24B22.10; putative protein;
      F24B22.20; F24B22.30; F24B22.40; fructokinase-like protein; F24B22.50;
      F24B22.60; uncoupling protein (ucp/PUMP); F24B22.70; F24B22.80;
      Machado-Joseph disease MJD1a-like protein; F24B22.90; peptide
      transport-like protein; F24B22.100; embryonic abundant protein-like;
      F24B22.110; F24B22.120; FKBP12 interacting protein (FIP37); F24B22.130;
      protein kinase cdc2 homolog B; F24B22.140; F24B22.150; F24B22.160;
      ribosomal protein L17-like protein; F24B22.170; SCARECROW1; F24B22.180;
      F24B22.190; putative protein (fragment); F24B22.200; DIPHOSPHOMEVALONATE
      DECARBOXYLASE-like protein; F24B22.210; F24B22.220; F24B22.230; TATA box
      binding protein (TBP) associated factor (TAF)-like protein; F24B22.240;
      hypothetical protein; F24B22.250; synaptobrevin-like protein;
      F24B22.260; F24B22.270.

ATF2A19     AL132962    95993bp    DNA      PLN      31-JAN-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19
     putative protein; F2A19.10; F2A19.20; plasma membrane intrinsic protein
      1a; F2A19.30; cysteine synthase AtcysC1; F2A19.40; F2A19.50; RING finger
      protein; F2A19.60; Lhca2 protein; F2A19.70; F2A19.80; F2A19.90;
      F2A19.100; 1-aminocyclopropane-1-carboxylate synthase-like protein;
      F2A19.110; F2A19.120; 3-methyl-2-oxobutanoate
      hydroxy-methyl-transferase-like protein; F2A19.130; prolyl
      aminopeptidase-like protein; F2A19.140; F2A19.150; F2A19.160; F2A19.170;
      delta-8 sphingolipid desaturase; F2A19.180; F2A19.190; F2A19.200;
      F2A19.210.

AC015448    AC015448    89129bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone T14L22, *** SEQUENCING IN
      PROGRESS ***, 7 unordered pieces.
     HTG; HTGS_PHASE1.

AC015447    AC015447   109299bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone F24J8, *** SEQUENCING IN PROGRESS
      ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC018460    AC018460   110619bp    DNA      PLN      01-FEB-2000
     Arabidopsis thaliana chromosome I BAC F11O6 genomic sequence, complete
      sequence.
     HTG.

AC018748    AC018748   116194bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome 1 clone T3F20, *** SEQUENCING IN PROGRESS
      ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC019012    AC019012   142825bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome 5 clone T3J11, *** SEQUENCING IN PROGRESS
      ***, 7 unordered pieces.
     HTG; HTGS_PHASE1.

AC021044    AC021044   121614bp    DNA      HTG      01-FEB-2000
     Arabidopsis thaliana chromosome I clone F3H9, *** SEQUENCING IN PROGRESS
      ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC020580    AC020580    95750bp    DNA      HTG      02-FEB-2000
     Arabidopsis thaliana chromosome III clone IGF-F5E6, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC019018    AC019018   129502bp    DNA      HTG      29-JAN-2000
     Arabidopsis thaliana chromosome I clone IGF-F14G24, *** SEQUENCING IN
      PROGRESS ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC021199    AC021199    78801bp    DNA      HTG      29-JAN-2000
     Arabidopsis thaliana chromosome I clone IGF-F7F23, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

ATH271355   AJ271355      541bp    DNA      ORG      28-JAN-2000
     Arabidopsis thaliana chloroplast partial k3F10TP gene for putative
      plastocyanin
     k3F10TP gene; plastocyanin; k3F10TP; putative plastocyanin; plastocyanin
      B.

AC021666    AC021666    95054bp    DNA      HTG      28-JAN-2000
     Arabidopsis thaliana chromosome I clone TAMU-T22A15, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC021665    AC021665   105698bp    DNA      HTG      02-FEB-2000
     Arabidopsis thaliana chromosome I clone IGF-F17M19, *** SEQUENCING IN
      PROGRESS ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

ATF28O9     AL137080    85710bp    DNA      PLN      28-JAN-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F28O9
     hypothetical protein fragment; F28O9.10; hypothetical protein; F28O9.20;
      putative protein; F28O9.30; F28O9.40; F28O9.50; F28O9.60;
      UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate
      transferase-like protein; F28O9.70; MADS-box transcription factor-like
      protein; F28O9.80; beta-1, 3-glucanase; F28O9.90; F28O9.100; beta-1,
      3-glucanase 2 (BG2); F28O9.110; glucan endo-1, 3-beta-D-glucosidase-like
      protein; F28O9.120; F28O9.130; translation initiation factor 3-like
      protein; F28O9.140; helicase-like protein; F28O9.150; F28O9.160;
      F28O9.170; Ca2+-transporting ATPase-like protein; F28O9.180; dnaJ-like
      protein; F28O9.190; F28O9.200; F28O9.210; F28O9.220; F28O9.230; MADS
      transcription factor-like protein; F28O9.240; F28O9.250; villin 3
      fragment; F28O9.260.

A94892      A94892      477bp    DNA      PLN      27-JAN-2000
     Sequence 4 from Patent WO9931258.

A95048      A95048     2416bp    DNA      PLN      27-JAN-2000
     Sequence 5 from Patent WO9929880.

ATHMTLP     D11394     1635bp    ds-DNA   PLN      01-FEB-2000
     A. thaliana gene for metallothionein-like protein, complete cds.
     chlorosis induced by iron-deficiency; cysteine rich; heavy metal-binding;
      metallothionein-like protein; AtMT-1G.

ATHMYB      D10936 D01155     2923bp    ds-DNA   PLN      01-FEB-2000
     A.thaliana gene encording myb homologue, complete cds.
     DNA-binding protein; myb-related gene; proto-oncogene; ATMYB1 protein;
      atmyb1.

ATHRCECAA   D13983     3262bp    ss-mRNA  PLN      01-FEB-2000
     A. thaliana mRNA for chloroplast envelope Ca2+-ATPase, complete cds.
     Ca2+-ATPase; chloroplast envelope Ca2+-ATPase; chloroplast envelope
      Ca2+-ATPase precursor; ACA1; 'chloroplast envelope Ca2+-ATPase'.

ATHAPX1     D14442 X70220     3050bp    ds-DNA   PLN      01-FEB-2000
     Arabidopsis thaliana DNA for ascorbate peroxidase.
     ascorbate peroxidase; APX1.

ATHATSA1    D00672     4008bp    ds-DNA   PLN      01-FEB-2000
     A.thaliana ATS1 gene for glycerol-3-phosphate acyltransferase.
     ATS1; acyltransferase; glycerol-3-phosphate acyltransferase.

ATHCDC2A    D10850     3479bp    ds-DNA   PLN      01-FEB-2000
     Arabidopsis thaliana CDC2a gene for p34 protein serine/threonine kinase.
     protein kinase; serine/threonine kinase; p32 protein serine/threonine
      kinase; CDC2a.

ATHCDC2BG   D10851     2611bp    ds-DNA   PLN      01-FEB-2000
     Arabidopsis thaliana CDC2b gene for p34 protein serine/threonine
      kinase-related protein.
     protein kinase; serine/threonine kinase; p32 protein serine/threonine
      kinase-related protein; CDC2b.

ATHDCECAA   D13984     4667bp    ds-DNA   PLN      01-FEB-2000
     A. thaliana ACA1 gene for chloroplast envelope Ca2+-ATPase, complete cds.
     Ca2+-ATPase; chloroplast envelope Ca2+-ATPase; chloroplast envelope
      Ca2+-ATPase precursor; ACA1; 'chloroplast envelope Ca2+-ATPase'.

ATHGR       D14049     1993bp    ss-mRNA  PLN      01-FEB-2000
     Arabidopsis thaliana mRNA for glutathione reductase, complete cds.
     glutathione reductase; glutathione reductase precursor.

ATHATSA2    D00673     1783bp    ss-mRNA  PLN      01-FEB-2000
     A.thaliana mRNA for glycerol-3-phosphate acyltransferase.
     acyltransferase; glycerol-3-phosphate acyltransferase;
      glycerol-3-phosphate acyltransferase precursor; ATS1.

ATHHSP81    D00710     3213bp    ds-DNA   PLN      01-FEB-2000
     A.thaliana HSP81-1 gene for 81kDa heat-shock protein.
     heat-shock protein.

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