New/Updated Arabidopsis DNA 12-Feb-2000

curator at arabidopsis.org curator at arabidopsis.org
Sat Feb 12 09:15:56 EST 2000


Dear Arabidopsis researchers,

The following information is the number of Arabidopsis entries in GenBank
that are new or were updated in the last week. These sequences have been
updated in TAIR and are available for searching using TAIR BLAST and FASTA
at:

http://arabidopsis.org/blast/

http://arabidopsis.org/cgi-bin/fasta/TAIRfasta.pl

New sequences      : 12
Updated sequences  : 0
Updated annotation : 20

====================== New DNA Sequences =======================

AC022456    AC022456    92428bp    DNA      HTG      03-FEB-2000
     Arabidopsis thaliana chromosome I clone TAMU-T4I21, *** SEQUENCING IN
      PROGRESS ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC022455    AC022455    83349bp    DNA      HTG      03-FEB-2000
     Arabidopsis thaliana chromosome I clone TAMU-T1P2, *** SEQUENCING IN
      PROGRESS ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

AF182813    AF182813     2403bp    mRNA     PLN      05-FEB-2000
     Arabidopsis thaliana vacuolar-type H+-translocating inorganic
      pyrophosphatase (AVP2) mRNA, complete cds.
     vacuolar-type H+-translocating inorganic pyrophosphatase; AVP2.

AF184917    AF184917     7500bp    DNA      PLN      05-FEB-2000
     Arabidopsis thaliana vacuolar-type H+-translocating inorganic
      pyrophosphatase (AVP2) gene, complete cds.
     vacuolar-type H+-translocating inorganic pyrophosphatase; AVP2.

AC022464    AC022464    97408bp    DNA      HTG      04-FEB-2000
     Arabidopsis thaliana chromosome 1 clone F22G5, *** SEQUENCING IN PROGRESS
      ***, 11 unordered pieces.
     HTG; HTGS_PHASE1.

AC022472    AC022472    93616bp    DNA      HTG      04-FEB-2000
     Arabidopsis thaliana chromosome 1 clone T20H2, *** SEQUENCING IN PROGRESS
      ***, 2 ordered pieces.
     HTG; HTGS_PHASE2.

ATF24I3     AL138655    91303bp    DNA      PLN      04-FEB-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F24I3
     putative protein; F24I3.10; leucine zipper-containing protein AT103;
      F24I3.20; F24I3.30; phosphatidylinositol-4-phosphate 5-kinase-like
      protein; F24I3.40; F24I3.50; F24I3.60; F24I3.70; F24I3.80; F24I3.90;
      F24I3.100; F24I3.110; responce reactor 4; F24I3.120; CYSTATHIONINE
      BETA-LYASE PRECURSOR (CBL); F24I3.130; F24I3.140; F24I3.150; F24I3.160;
      hypothetical protein; F24I3.170; F24I3.180; F24I3.190; F24I3.200;
      F24I3.210; F24I3.220; F24I3.230; F24I3.240; F24I3.250.

ATT14D3     AL138649    88010bp    DNA      PLN      04-FEB-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3
     sulfotransferase-like protein; T14D3.10; T14D3.20; putative protein;
      T14D3.30; n-acetylglucosaminyl-phosphatidylinositol-like protein;
      T14D3.40; T14D3.50; T14D3.60; oxidosqualene cyclase-like protein;
      T14D3.70; lipoxygenase AtLOX2; T14D3.80; T14D3.90; hypothetical protein;
      T14D3.100; T14D3.110; T14D3.120; T14D3.130; T14D3.140; T14D3.150;
      serpin-like protein; T14D3.160; serine/proline-rich; T14D3.170;
      serine/threonine-protein kinase-like protein; T14D3.180.

AC022492    AC022492   125138bp    DNA      HTG      05-FEB-2000
     Arabidopsis thaliana chromosome 1 clone F1L3, *** SEQUENCING IN PROGRESS
      ***, 19 unordered pieces.
     HTG; HTGS_PHASE1.

AC022522    AC022522    45308bp    DNA      HTG      05-FEB-2000
     Arabidopsis thaliana chromosome I clone T28K15, *** SEQUENCING IN
      PROGRESS ***, 13 unordered pieces.
     HTG; HTGS_PHASE1.

AC022521    AC022521   120854bp    DNA      HTG      05-FEB-2000
     Arabidopsis thaliana chromosome I clone T14P4, *** SEQUENCING IN PROGRESS
      ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC022520    AC022520   110608bp    DNA      HTG      05-FEB-2000
     Arabidopsis thaliana chromosome I clone F8L10, *** SEQUENCING IN PROGRESS
      ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.


=========== Updated Sequence Features/Annotations  =============

AF032883    AF032883     2403bp    DNA      PLN      04-FEB-2000
     Arabidopsis thaliana DnaJ homolog AtJ3 (ATJ3) gene, complete cds.
     AtJ3; ATJ3.

AF081201    AF081201     2806bp    mRNA     PLN      07-FEB-2000
     Arabidopsis thaliana villin 1 (VLN1) mRNA, complete cds.
     villin 1; VLN1.

AF081202    AF081202     3107bp    mRNA     PLN      07-FEB-2000
     Arabidopsis thaliana villin 2 (VLN2) mRNA, complete cds.
     villin 2; VLN2.

AF081203    AF081203     3335bp    mRNA     PLN      07-FEB-2000
     Arabidopsis thaliana villin 3 (VLN3) mRNA, complete cds.
     VLN3; villin 3.

AC006424    AC006424   122836bp    DNA      PLN      05-FEB-2000
     Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete
      sequence.
     HTG; Location of EST 206I21T7, gb|N37185; F9L11.1; MUDRA-like
      transposase; F9L11.2; CDS; F9L11.3; Several near identical copies of
      this gene are pr>; F9L11.4; F9L11.5; F9L11.6; F9L11.7; granule-bound
      starch synthase; F9L11.8; Highly similar to YUP8H12R.39.; F9L11.9;
      Highly similar to avr9; F9L11.10; First of four adjacent putative
      subtilase family >; F9L11.11; Second of four adjacent putative subtilase
      family>; F9L11.12; Third of four adjacent putative subtilase family >;
      F9L11.13; Fourth of four adjacent putative subtilase family>; F9L11.14;
      Very similar to Spinacia oleracea 50S ribosomal p>; F9L11.15; F9L11.16;
      F9L11.17; F9L11.18; Very similar to alpha-NACs, (Nascent polypeptide >;
      F9L11.19; F9L11.20; F9L11.21; F9L11.22; F9L11.23.

T15D22      AC012189    20152bp    DNA      PLN      04-FEB-2000
     Arabidopsis thaliana chromosome 1 BAC T15D22 sequence, complete sequence.
     HTG; T15D22.1; T15D22.2; T15D22.3; T15D22.4; T15D22.5; T15D22.6;
      T15D22.7; T15D22.8; T15D22.9; T15D22.10; T15D22.11.

AC013430    AC013430    95771bp    DNA      PLN      07-FEB-2000
     Genomic sequence for Arabidopsis thaliana BAC F3F9 from chromosome I,
      complete sequence.
     HTG.

AC016041    AC016041   119091bp    DNA      PLN      06-FEB-2000
     Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I,
      complete sequence.
     HTG.

ATAC018907  AC018907    93478bp    DNA      PLN      03-FEB-2000
     Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete
      sequence.
     HTG; F28L1.1; F28L1.2; F28L1.3; putative major intrinsic protein;
      F28L1.4; tRNA-Gly; F28L1.5; putative dual-specificity protein
      phosphatase; F28L1.6; putative helix-loop-helix DNA-binding protein;
      F28L1.7; F28L1.8; putative RING zinc finger protein; F28L1.9; F28L1.10;
      F28L1.11; F28L1.12; F28L1.13; F28L1.14; putative guanylate kinase;
      F28L1.15; F28L1.16; F28L1.17; putative MAP kinase; F28L1.18; F28L1.19;
      F28L1.20; putative glycosyl transferase; F28L1.21; putative protein
      phosphatase-2C (PP2C); F28L1.22; F28L1.23; F28L1.24; tRNA-Pro.

AF177417    AF177417     4442bp    DNA      PLN      04-FEB-2000
     Arabidopsis arenosa clone 112.8.06 ribosomal RNA intergenic region and
      external transcribed spacer region, complete sequence.
     external transcribed spacer.

AF177418    AF177418     4197bp    DNA      PLN      04-FEB-2000
     Arabidopsis neglecta clone 102.5.010 ribosomal RNA intergenic region and
      external transcribed spacer region, complete sequence.
     external transcribed spacer.

AF177419    AF177419     3679bp    DNA      PLN      04-FEB-2000
     Arabidopsis suecica clone 113.7.9 ribosomal RNA intergenic region and
      external transcribed spacer region, complete sequence.
     external transcribed spacer.

ATAC019018  AC019018   126253bp    DNA      PLN      03-FEB-2000
     Arabidopsis thaliana chromosome I BAC F14G24 genomic sequence, complete
      sequence.
     HTG; F14G24.1; putative histone H2A; F14G24.2; F14G24.3; putative lipase;
      F14G24.4; putative non-phototropic hypocotyl; F14G24.5; F14G24.6;
      putative oxidoreductase; F14G24.7; F14G24.8; F14G24.9; F14G24.10;
      putative IAA6 protein; F14G24.11; F14G24.12; F14G24.13; tRNA-Thr;
      F14G24.14; F14G24.15; NAM-like protein; F14G24.16; F14G24.17; F14G24.18;
      F14G24.19; putative G protein-coupled receptor; F14G24.20; F14G24.21;
      putative purple acid phosphatase; F14G24.22; putative replication
      protein; F14G24.23; F14G24.24; F14G24.25; putative GTP-binding protein;
      F14G24.26; putative thioredoxin; F14G24.27; F14G24.28; putative
      deoxyoctulonosic acid synthetase; F14G24.29; F14G24.30; putative
      ubiquitin-conjugating enzyme; F14G24.31.

AC021640    AC021640   104615bp    DNA      HTG      03-FEB-2000
     Arabidopsis thaliana chromosome III clone IGF-F16B3, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC021665    AC021665   105701bp    DNA      HTG      04-FEB-2000
     Arabidopsis thaliana chromosome I clone IGF-F17M19, *** SEQUENCING IN
      PROGRESS ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

AB030278    AB030278      981bp    mRNA     PLN      11-FEB-2000
     Arabidopsis thaliana mRNA for MinD, complete cds.
     MinD; minD.

AC022288    AC022288    81422bp    DNA      HTG      04-FEB-2000
     Arabidopsis thaliana chromosome I clone TAMU-T3M13, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC022287    AC022287    92304bp    DNA      HTG      03-FEB-2000
     Arabidopsis thaliana chromosome III clone TAMU-T27C4, *** SEQUENCING IN
      PROGRESS ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

AC022314    AC022314   122251bp    DNA      HTG      04-FEB-2000
     Arabidopsis thaliana chromosome 1 clone F9C16, *** SEQUENCING IN PROGRESS
      ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

AC022355    AC022355    79413bp    DNA      HTG      05-FEB-2000
     Arabidopsis thaliana chromosome I clone IGF-F9N12, *** SEQUENCING IN
      PROGRESS ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

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