New/Updated Arabidopsis DNA 19-Feb-2000

curator at arabidopsis.org curator at arabidopsis.org
Sat Feb 19 09:18:17 EST 2000


Dear Arabidopsis researchers,

The following information is the number of Arabidopsis entries in GenBank
that are new or were updated in the last week. These sequences have been
updated in TAIR and are available for searching using TAIR BLAST and FASTA
at:

http://arabidopsis.org/blast/

http://arabidopsis.org/cgi-bin/fasta/TAIRfasta.pl

New sequences      : 25
Updated sequences  : 0
Updated annotation : 28

====================== New DNA Sequences =======================

ALY251276   AJ251276     1687bp    DNA      PLN      09-FEB-2000
     Arabidopsis lyrata subsp. petraea partial adh gene for alcohol
      dehydrogenase, exons 1-7 Kar-26
     ADH gene; alcohol dehydrogenase; adh.

ALY251277   AJ251277     1683bp    DNA      PLN      09-FEB-2000
     Arabidopsis lyrata subsp. petraea partial adh gene for alcohol
      dehydrogenase, exons 1-7 Kar-8
     ADH gene; alcohol dehydrogenase; adh.

ALY251278   AJ251278     1688bp    DNA      PLN      09-FEB-2000
     Arabidopsis lyrata subsp. petraea partial adh gene for alcohol
      dehydrogenase, exons 1-7 Kar-12
     ADH gene; alcohol dehydrogenase; adh.

ALY251279   AJ251279     1685bp    DNA      PLN      09-FEB-2000
     Arabidopsis lyrata subsp. petraea partial adh gene for alcohol
      dehydrogenase, exons 1-7 Kar-24
     ADH gene; alcohol dehydrogenase; adh.

ALY251280   AJ251280     1682bp    DNA      PLN      09-FEB-2000
     Arabidopsis lyrata subsp. petraea partial adh gene for alcohol
      dehydrogenase, exons 1-7 Ice2
     ADH gene; alcohol dehydrogenase; adh.

ALY251281   AJ251281     1679bp    DNA      PLN      09-FEB-2000
     Arabidopsis lyrata subsp. petraea partial adh gene for alcohol
      dehydrogenase, exons 1-7 Ice18
     ADH gene; alcohol dehydrogenase; adh.

ATH272027   AJ272027     5340bp    DNA      PLN      09-FEB-2000
     Arabidopsis thaliana oasA1 gene for O-acetylserine (thiol) lyase A1,
      exons 1-11
     O-acetylserine (thiol) lyase A1; oasA1 gene; oasA1.

ATH272028   AJ272028     3883bp    DNA      PLN      09-FEB-2000
     Arabidopsis thaliana partial oasA2 pseudogene for O-acetylserine (thiol)
      lyase A2, exons 1-6
     O-acetylserine(thiol) lyase; oasA2 gene; oasA2; O-acetylserine (thiol)
      lyase A2.

ATT18B22    AL138652    91567bp    DNA      PLN      09-FEB-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone T18B22
     protein kinase-like protein; T18B22.10; protein-tyrosine-phosphatase-like
      protein; T18B22.20; disease resistance protein homolog; T18B22.30;
      putative protein; T18B22.40; T18B22.50; T18B22.60; disease resistance
      protein homlog; T18B22.70; T18B22.80; T18B22.90; T18B22.100; T18B22.110.

AF216581    AF216581      633bp    DNA      PLN      09-FEB-2000
     Arabidopsis thaliana AP2/EREBP-like transcription factor LEAFY PETIOLE
      gene, partial cds.
     AP2/EREBP-like transcription factor LEAFY PETIOLE.

AF216524    AF216524     1526bp    mRNA     PLN      09-FEB-2000
     Arabidopsis thaliana IAA-alanine resistance protein 1 mRNA, complete cds.
     IAA-alanine resistance protein 1.

AF216525    AF216525     1830bp    mRNA     PLN      09-FEB-2000
     Arabidopsis thaliana FKF1-like protein 2 mRNA, complete cds.
     FKF1-like protein 2.

AF218807    AF218807     1325bp    mRNA     PLN      09-FEB-2000
     Arabidopsis thaliana ReMembR-H2 protein JR700 mRNA, complete cds.
     ReMembR-H2 protein JR700.

AF218808    AF218808     1404bp    mRNA     PLN      09-FEB-2000
     Arabidopsis thaliana ReMembR-H2 protein JR702 mRNA, partial cds.
     ReMembR-H2 protein JR702.

AF221984    AF221984     3803bp    DNA      PLN      09-FEB-2000
     Arabidopsis thaliana threonine dehydratase/deaminase (OMR1) gene,
      complete cds.
     OMR1; threonine dehydratase/deaminase.

AF181683    AF181683     1981bp    mRNA     PLN      11-FEB-2000
     Arabidopsis thaliana RPT2 (RPT2) mRNA, complete cds.
     RPT2.

AF216523    AF216523     2066bp    mRNA     PLN      11-FEB-2000
     Arabidopsis thaliana FKF1 mRNA, complete cds.
     FKF1.

AC023064    AC023064    63070bp    DNA      HTG      08-FEB-2000
     Arabidopsis thaliana chromosome I clone IGF-F12A4, *** SEQUENCING IN
      PROGRESS ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

AC023279    AC023279   112388bp    DNA      HTG      11-FEB-2000
     Arabidopsis thaliana chromosome 1 clone F12K21, *** SEQUENCING IN
      PROGRESS ***, 11 unordered pieces.
     HTG; HTGS_PHASE1.

AF224762    AF224762      754bp    mRNA     PLN      16-FEB-2000
     Arabidopsis thaliana SigA binding protein mRNA, complete cds.
     SigA binding protein.

ATF9K21     AL138657   110980bp    DNA      PLN      16-FEB-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F9K21
     receptor like protein kinase; F9K21.10; F9K21.20; clpC-like protein;
      F9K21.30; putative protein; F9K21.40; F9K21.50; F9K21.60; F9K21.70;
      hypothetical protein; F9K21.80; F9K21.90; copia-like polyprotein;
      F9K21.100; F9K21.110; F9K21.120; F9K21.130; F9K21.140; F9K21.150;
      F9K21.160; F9K21.170; F9K21.180; dof6 zinc finger protein; F9K21.190;
      F9K21.200; F9K21.210; mitogen-activated protein kinase 3; F9K21.220;
      F9K21.230; F9K21.240; putative protein kinase; F9K21.250.

ATH251086   AJ251086     2578bp    RNA      PLN      16-FEB-2000
     Arabidopsis thaliana mRNA for ABI3-interacting protein 1 (aip1 gene)
     ABI3-interacting protein 1; aip1 gene; ABI3-interacting protein, AIP1;
      aip1.

ATH251087   AJ251087     1168bp    RNA      PLN      16-FEB-2000
     Arabidopsis thaliana mRNA for ABI3-interacting protein 2, AIP2 (aip2
      gene)
     ABI3-Interacting Protein 2; aip2 gene; ABI3-interacting protein 2, AIP2;
      aip2.

ATH251088   AJ251088      390bp    RNA      PLN      16-FEB-2000
     Arabidopsis thaliana partial mRNA for ABI3-interacting protein 3, AIP3
      (aip3 gene)
     ABI3-interacting protein 3; aip3 gene; ABI3-interacting protein 3, AIP3;
      aip3.

ATT16L24    AL138659    91851bp    DNA      PLN      16-FEB-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone T16L24
     putative protein; T16L24.10; T16L24.20; fructokinase-like protein;
      T16L24.30; T16L24.40; T16L24.50; T16L24.60; T16L24.70; T16L24.80; 60S
      RIBOSOMAL PROTEIN L38-like protein; T16L24.90; T16L24.100; T16L24.110;
      T16L24.120; T16L24.130; T16L24.140; T16L24.150; T16L24.160; T16L24.170;
      T16L24.180; T16L24.190; T16L24.200; T16L24.210; T16L24.220; T16L24.230;
      T16L24.240; serine/threonine-specific kinase lecRK1 precursor, lectin
      receptor-like; T16L24.250; T16L24.260; copia-type reverse
      transcriptase-like protein; T16L24.270; receptor lectin kinase-like
      protein (fragment); T16L24.280; receptor lectin kinase 3; T16L24.290.


=========== Updated Sequence Features/Annotations  =============

ATOACLY     X80376     1253bp    RNA      PLN      15-FEB-2000
     Arabidopsis thaliana mRNA for O-acetylserine lyase (At.OAS.5-8)
     O-acetylserine(thiol) lyase; O-acetylserine (thiol) lyase.

ATOACLY2    X80377     1378bp    RNA      PLN      15-FEB-2000
     Arabidopsis thaliana mRNA for O-acetylserine lyase (At.OAS.7-4)
     O-acetylserine(thiol) lyase; O-acetylserine (thiol) lyase.

ATH010818   AJ010818      951bp    RNA      ORG      16-FEB-2000
     Arabidopsis thaliana mRNA for chloroplast Cpn21 protein
     Cpn21 protein; cpn21 gene; cpn21; Cpn21.

AC006423    AC006423   131692bp    DNA      PLN      08-FEB-2000
     Arabidopsis thaliana chromosome I BAC F28H19 genomic sequence, complete
      sequence.
     HTG.

AC006535    AC006535    98630bp    DNA      PLN      15-FEB-2000
     Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
      complete sequence.
     HTG.

AC008046    AC008046    94618bp    DNA      PLN      08-FEB-2000
     Arabidopsis thaliana chromosome I BAC F5A13 genomic sequence, complete
      sequence.
     HTG.

AC010793    AC010793    90149bp    DNA      PLN      08-FEB-2000
     Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I,
      complete sequence.
     HTG.

AC011810    AC011810    99345bp    DNA      HTG      14-FEB-2000
     Arabidopsis thaliana chromosome I clone T6J4, *** SEQUENCING IN PROGRESS
      ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

ATF18N11    AL132953    91274bp    DNA      PLN      16-FEB-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F18N11
     hypothetical protein; F18N11.10; zinc finger protein; F18N11.20; putative
      protein; F18N11.30; F18N11.40; F18N11.50; isovaleryl-CoA-dehydrogenase
      precursor (IVD); F18N11.60; cysteine protease-like protein; F18N11.70;
      F18N11.80; receptor-like protein kinase; F18N11.90; F18N11.100;
      F18N11.110; F18N11.120; F18N11.130; F18N11.140; F18N11.150; F18N11.160;
      F18N11.170; F18N11.180.

ATH131404   AJ131404     1257bp    RNA      PLN      17-FEB-2000
     Arabidopsis thaliana mRNA for 3-mercaptopyruvate sulfurtransferase
     3-mercaptopyruvate sulfurtransferase; mst1 gene; thiosulfate
      sulfurtransferase; Mst1.

ATH238149   AJ238149     1346bp    RNA      PLN      17-FEB-2000
     Arabidopsis thaliana mRNA for 12-oxo-phytodienoate reductase
     12-oxo-phytodienoate reductase; opr3 gene; opr3.

AC020646    AC020646   103931bp    DNA      PLN      10-FEB-2000
     Genomic sequence for Arabidopsis thaliana BAC T32E20 from chromosome I,
      complete sequence.
     HTG.

ATAC020579  AC020579    50821bp    DNA      PLN      08-FEB-2000
     Arabidopsis thaliana chromosome I BAC F1O17 genomic sequence, complete
      sequence.
     HTG; F1O17.1; putative choline kinase; F1O17.2; heat shock protein 101;
      F1O17.3; F1O17.4; F1O17.5; F1O17.6; putative ribosomal protein; F1O17.7;
      putative phosphoribosylformylglycinamidine synthase; F1O17.8; putative
      heat shock protein; F1O17.9; putative mitochondrial carrier protein;
      F1O17.10; putative RNA-binding protein; F1O17.11; F1O17.12; putative
      glycerophosphodiester phosphodiesterase; F1O17.13; putative disease
      resistance protein; F1O17.14.

AC020576    AC020576   115421bp    DNA      HTG      09-FEB-2000
     Arabidopsis thaliana chromosome 1 BAC T12C22 sequence, complete sequence.
     HTG.

AC020889    AC020889    95295bp    DNA      PLN      08-FEB-2000
     Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome I,
      complete sequence.
     HTG.

AC021198    AC021198    81513bp    DNA      PLN      09-FEB-2000
     Arabidopsis thaliana chromosome 1 BAC F14D7 sequence, complete sequence.
     HTG.

ATAC021199  AC021199    73252bp    DNA      PLN      15-FEB-2000
     Arabidopsis thaliana chromosome I BAC F7F23 genomic sequence, complete
      sequence.
     HTG; F7F23.1; F7F23.2; F7F23.3; F7F23.4; F7F23.5; F7F23.6; putative
      ubiquitin conjugating enzyme; F7F23.7; tRNA-Ala; F7F23.8; F7F23.9;
      putative hydroxymethyltransferase; F7F23.10; F7F23.11; putative heat
      shock protein; F7F23.12; F7F23.13; F7F23.14; F7F23.15; F7F23.16.

ATAC021640  AC021640   103904bp    DNA      PLN      09-FEB-2000
     Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence, complete
      sequence.
     HTG; F16B3.1; F16B3.2; COL2; F16B3.3; F16B3.4; F16B3.5; F16B3.6; F16B3.7;
      F16B3.8; cell division protein FtsH-like protein; F16B3.9; putative
      plant adhesion molecule; F16B3.10; S-adenosylmethionine decarboxylase;
      F16B3.11; F16B3.12; F16B3.13; F16B3.14; F16B3.15; putative 14-3-3
      protein; F16B3.16; putative chaperonin; F16B3.17; putative RAD23;
      F16B3.18; F16B3.19; putative 40S ribosomal protein; F16B3.20; putative
      mannose-6-phosphate isomerase; F16B3.21; sterol-C5-desaturase; F16B3.22;
      putative sterol-C5-desaturase; F16B3.23; putative phosphatidate
      phosphohydrolase; F16B3.24; putative stearoyl-acyl carrier protein
      desaturase; F16B3.25; F16B3.26; F16B3.27; F16B3.28; F16B3.29; putative
      tyrosyl-tRNA synthetase; F16B3.30; F16B3.31; F16B3.32; F16B3.33;
      F16B3.34; F16B3.35; tRNA-Ser.

ATAC021666  AC021666    93859bp    DNA      PLN      14-FEB-2000
     Arabidopsis thaliana chromosome I BAC T22A15 genomic sequence, complete
      sequence.
     HTG; T22A15.1; T22A15.2; putative AP2 domain-containing transcription
      factor; T22A15.3; T22A15.4; T22A15.5; T22A15.6; T22A15.7; T22A15.8;
      T22A15.9; Mutator-like transposase; T22A15.10; T22A15.11; T22A15.12;
      T22A15.13; T22A15.14; T22A15.15.

ATAC021665  AC021665    80413bp    DNA      PLN      15-FEB-2000
     Arabidopsis thaliana chromosome I BAC F17M19 genomic sequence, complete
      sequence.
     HTG; protein tyrosine phosphatase, 5'-partial; F17M19.1; F17M19.2;
      F17M19.3; sucrose transport protein SUC1; F17M19.4; putative sucrose
      transport protein; F17M19.5; F17M19.6; F17M19.7; putative
      histidinol-phosphate aminotransferase; F17M19.8; NAM-like protein;
      F17M19.9; F17M19.10; F17M19.11; putative ABC transporter; F17M19.12;
      F17M19.13; F17M19.14; F17M19.15; putative invertase.

AB030278    AB030278      981bp    mRNA     PLN      11-FEB-2000
     Arabidopsis thaliana mRNA for MinD, complete cds.
     MinD; minD.

ATAC022288  AC022288    80309bp    DNA      PLN      08-FEB-2000
     Arabidopsis thaliana chromosome I BAC T3M13 genomic sequence, complete
      sequence.
     HTG; T3M13.1; AIG1-like protein, 5' partial; T3M13.2; AIG1; T3M13.3;
      AIG1-like protein; T3M13.4; T3M13.5; T3M13.6; T3M13.7; T3M13.8; T3M13.9;
      T3M13.10; T3M13.11; T3M13.12; T3M13.13; T3M13.14; T3M13.15; T3M13.16;
      T3M13.17; putative gag-pol polyprotein.

AC022287    AC022287    92830bp    DNA      HTG      08-FEB-2000
     Arabidopsis thaliana chromosome III clone TAMU-T27C4, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC022314    AC022314   121990bp    DNA      HTG      14-FEB-2000
     Arabidopsis thaliana chromosome 1 clone F9C16, *** SEQUENCING IN PROGRESS
      ***, 2 ordered pieces.
     HTG; HTGS_PHASE2.

AC022472    AC022472    92710bp    DNA      PLN      15-FEB-2000
     Arabidopsis thaliana chromosome 1 BAC T20H2 sequence, complete sequence.
     HTG.

AC022492    AC022492   127989bp    DNA      HTG      14-FEB-2000
     Arabidopsis thaliana chromosome 1 clone F1L3, *** SEQUENCING IN PROGRESS
      ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC022522    AC022522    88643bp    DNA      HTG      14-FEB-2000
     Arabidopsis thaliana chromosome I clone T28K15, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC022520    AC022520   110611bp    DNA      PLN      08-FEB-2000
     Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete
      sequence.
     HTG.

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