New/Updated Arabidopsis DNA 01-Jul-2000

curator at arabidopsis.org curator at arabidopsis.org
Sat Jul 1 16:42:38 EST 2000


Dear Arabidopsis researchers,

The following information is the number of Arabidopsis entries in GenBank
that are new or were updated in the last week. These sequences have been
updated in TAIR and are available for searching using TAIR BLAST and FASTA
at:

http://arabidopsis.org/blast/

http://arabidopsis.org/cgi-bin/fasta/TAIRfasta.pl

New sequences      : 29
Updated sequences  : 0
Updated annotation : 11

====================== New DNA Sequences =======================

AB030820    AB030820     1849bp    mRNA     PLN      20-JUN-2000
     Arabidopsis thaliana ALDH2 mRNA for aldehyde dehydrogenase, complete cds.
     aldehyde dehydrogenase; ALDH2.

ALY287322   AJ287322     1521bp    DNA      PLN      21-JUN-2000
     Arabidopsis lyrata ssp petraea chi gene for chalcone flavanone isomerase,
      exons 1-4
     CHI gene; chalcone flavanone isomerase; chi.

ATH287299   AJ287299     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Can-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287300   AJ287300     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Cha-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287301   AJ287301     1877bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Col-2
     CHI gene; chalcone flavanone isomerase; chi.

ATH287302   AJ287302     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Condhara
     CHI gene; chalcone flavanone isomerase; chi.

ATH287303   AJ287303     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Gran1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287304   AJ287304     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Grap1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287305   AJ287305     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Ita-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287306   AJ287306     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Kas-1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287307   AJ287307     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Me-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287308   AJ287308     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Mh-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287309   AJ287309     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Mr-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287310   AJ287310     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Rv1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287311   AJ287311     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Tv1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287312   AJ287312     1924bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Wlp1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287313   AJ287313     1895bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Cvi-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287314   AJ287314     1925bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Ed1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287315   AJ287315     1925bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Gr-5
     CHI gene; chalcone flavanone isomerase; chi.

ATH287316   AJ287316     1923bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Lu1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287317   AJ287317     1923bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Per-1
     CHI gene; chalcone flavanone isomerase; chi.

ATH287318   AJ287318     1923bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Ri-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287319   AJ287319     1923bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Tul-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287320   AJ287320     1923bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Yo-0
     CHI gene; chalcone flavanone isomerase; chi.

ATH287321   AJ287321     1926bp    DNA      PLN      21-JUN-2000
     Arabidopsis thaliana chi gene for chalcone flavanone isomerase, exons
      1-4, ecotype Rub-1
     CHI gene; chalcone flavanone isomerase; chi.

AP002543    AP002543    74350bp    DNA      PLN      23-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7.
     HTG.

AP002544    AP002544    35301bp    DNA      PLN      23-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBL20.
     HTG.

AF233752    AF233752     2825bp    DNA      PLN      11-JUN-2000
     Arabidopsis thaliana short-root protein (shr) gene, complete cds.
     shr; short-root protein.

AF233753    AF233753     2059bp    DNA      PLN      11-JUN-2000
     Arabidopsis thaliana shr-2 mutant gene, complete sequence.
     shr.


=========== Updated Sequence Features/Annotations  =============

AC005106    AC005106    84203bp    DNA      PLN      10-JUN-2000
     Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
      complete sequence.
     HTG.

F24B9       AC007583   107234bp    DNA      PLN      10-JUN-2000
     Arabidopsis thaliana chromosome 1 BAC F24B9 sequence, complete sequence.
     HTG; F24B9.1; F24B9.2; F24B9.3; F24B9.4; F24B9.5; F24B9.6; F24B9.7;
      F24B9.8; F24B9.9; F24B9.10; F24B9.11; F24B9.12; tRNA-His; F24B9.13;
      F24B9.14; F24B9.15; F24B9.16; F24B9.17; F24B9.18; F24B9.19; F24B9.20;
      F24B9.21; F24B9.22; F24B9.23; F24B9.24; F24B9.25; F24B9.26; F24B9.27;
      F24B9.28; F24B9.29; F24B9.30; F24B9.31; F24B9.32; F24B9.33; F24B9.34.

ATH133753   AJ133753      907bp    RNA      PLN      20-JUN-2000
     Arabidopsis thaliana mRNA for peptide methionine sulfoxide reductase
     msr gene; peptide methionine sulfoxide reductase; msr.

ATH133754   AJ133754     2650bp    DNA      PLN      20-JUN-2000
     Arabidopsis thaliana gene for peptide methionine sulfoxide reductase
     msr gene; peptide methionine sulfoxide reductase; msr; msn.

AB028609    AB028609    78529bp    DNA      PLN      24-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8.
     HTG.

AF162441    AF162441     1062bp    mRNA     PLN      12-JUN-2000
     Arabidopsis thaliana cis-prenyltransferase homolog mRNA, complete cds.
     cis-prenyltransferase homolog.

AC069251    AC069251   143876bp    DNA      HTG      11-JUN-2000
     Arabidopsis thaliana chromosome 1 clone F2D10, *** SEQUENCING IN PROGRESS
      ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069252    AC069252    91811bp    DNA      HTG      11-JUN-2000
     Arabidopsis thaliana chromosome 1 clone F2E2, *** SEQUENCING IN PROGRESS
      ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069325    AC069325    87174bp    DNA      HTG      10-JUN-2000
     Arabidopsis thaliana chromosome 5 clone T10F18, *** SEQUENCING IN
      PROGRESS ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC069327    AC069327    93845bp    DNA      HTG      10-JUN-2000
     Arabidopsis thaliana chromosome 5 clone T26G08, *** SEQUENCING IN
      PROGRESS ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC069329    AC069329   150827bp    DNA      HTG      10-JUN-2000
     Arabidopsis thaliana chromosome 5 clone T3P01, *** SEQUENCING IN PROGRESS
      ***, 11 unordered pieces.
     HTG; HTGS_PHASE1.


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