New/Updated Arabidopsis DNA 03-Jun-2000

curator at arabidopsis.org curator at arabidopsis.org
Sat Jun 3 15:51:20 EST 2000


Dear Arabidopsis researchers,

The following information is the number of Arabidopsis entries in GenBank
that are new or were updated in the last week. These sequences have been
updated in TAIR and are available for searching using TAIR BLAST and FASTA
at:

http://arabidopsis.org/blast/

http://arabidopsis.org/cgi-bin/fasta/TAIRfasta.pl

New sequences      : 37
Updated sequences  : 0
Updated annotation : 54

====================== New DNA Sequences =======================

AF135189    AF135189     2271bp    mRNA     PLN      27-APR-2000
     Arabidopsis thaliana zinc dependent protease (VAR2) mRNA, complete cds;
      nuclear gene for chloroplast product.
     VAR2; zinc dependent protease.

AC069159    AC069159   112446bp    DNA      HTG      31-MAY-2000
     Arabidopsis thaliana chromosome I clone IGF-F14G9, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069160    AC069160   100954bp    DNA      HTG      31-MAY-2000
     Arabidopsis thaliana chromosome I clone TAMU-T15K4, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069299    AC069299   101488bp    DNA      HTG      25-MAY-2000
     Arabidopsis thaliana chromosome I clone TAMU-T1E4, *** SEQUENCING IN
      PROGRESS ***, 12 unordered pieces.
     HTG; HTGS_PHASE1.

AF186466    AF186466     7317bp    DNA      PLN      25-MAY-2000
     Arabidopsis thaliana non-phototropic hypocotyl 4 (NPH4) gene, complete
      cds.
     non-phototropic hypocotyl 4; NPH4.

ATH242671   AJ242671     1628bp    RNA      PLN      27-MAY-2000
     Arabidopsis thaliana mRNA for putative serine threonine kinase (aak1
      gene)
     AAK1 protein; aak1 gene; serine threonine kinase; putative serine
      threonine kinase; aak1.

AC069325    AC069325    85237bp    DNA      HTG      27-MAY-2000
     Arabidopsis thaliana chromosome 5 clone T10F18, *** SEQUENCING IN
      PROGRESS ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

AC069327    AC069327    94287bp    DNA      HTG      27-MAY-2000
     Arabidopsis thaliana chromosome 5 clone T26G08, *** SEQUENCING IN
      PROGRESS ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC069329    AC069329   165942bp    DNA      HTG      27-MAY-2000
     Arabidopsis thaliana chromosome 5 clone T3P01, *** SEQUENCING IN PROGRESS
      ***, 27 unordered pieces.
     HTG; HTGS_PHASE1.

AB035288    AB035288     2577bp    mRNA     PLN      30-MAY-2000
     Arabidopsis thaliana fkfbp mRNA for fructose-6-phosphate,
      2-kinase/fructose-2,6-bisphosphatase, complete cds.
     Fructose-6-phosphate,2-kinase/Fructose-2,6-bisphosphatase;
      fructose-6-phosphate,2-kinase/fructose-2, 6-bisphosphatase; fkfbp.

AF262733    AF262733      972bp    mRNA     PLN      30-MAY-2000
     Arabidopsis thaliana putative transcription factor MYB108 (MYB108) mRNA,
      complete cds.
     putative transcription factor MYB108; MYB108.

AF262734    AF262734     1200bp    mRNA     PLN      30-MAY-2000
     Arabidopsis thaliana putative transcription factor MYB109 (MYB109) mRNA,
      complete cds.
     putative transcription factor MYB109; MYB109.

AF263518    AF263518    10989bp    DNA      PLN      31-MAY-2000
     Arabidopsis thaliana protein synthesis initiation factor 4G (EIF4G) gene,
      complete cds.
     protein synthesis initiation factor 4G; EIF4G.

AF263834    AF263834      452bp    mRNA     PLN      31-MAY-2000
     Arabidopsis thaliana protein synthesis initiation factor 4G (EIF4G) mRNA,
      partial cds.
     protein synthesis initiation factor 4G; EIF4G.

AF148541    AF148541     2581bp    mRNA     PLN      01-JUN-2000
     Arabidopsis thaliana cyclic nucleotide-binding transporter 1 (CNBT1)
      mRNA, complete cds.
     CNBT1; cyclic nucleotide-binding transporter 1.

AF148542    AF148542     9070bp    DNA      PLN      01-JUN-2000
     Arabidopsis thaliana cyclic nucleotide-binding transporter 2 (CNBT2) and
      cyclic nucleotide-binding transporter 1 (CNBT1) genes, complete cds.
     cyclic nucleotide-binding transporter 2; CNBT2; cyclic nucleotide-binding
      transporter 1; CNBT1.

AF148852    AF148852     1775bp    mRNA     PLN      01-JUN-2000
     Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase
      (DXR) mRNA, complete cds.
     DXR; 1-deoxy-D-xylulose 5-phosphate reductoisomerase.

AF153443    AF153443     1793bp    mRNA     PLN      01-JUN-2000
     Arabidopsis thaliana phytochrome A signal transduction 1 protein (PAT1)
      mRNA, complete cds.
     PAT1; phytochrome A signal transduction 1 protein.

AF155171    AF155171     6570bp    DNA      PLN      01-JUN-2000
     Arabidopsis thaliana flavonoid 3'-hydroxylase (TT7) gene, complete cds.
     flavonoid 3'-hydroxylase; TT7.

AF213627    AF213627     6554bp    mRNA     PLN      01-JUN-2000
     Arabidopsis thaliana MOM mRNA, complete cds.
     MOM.

AF213628    AF213628    10329bp    DNA      PLN      01-JUN-2000
     Arabidopsis thaliana MOM gene, complete cds.
     MOM.

IG007P01    AF272706   110714bp    DNA      PLN      01-JUN-2000
     Arabidopsis thaliana BAC IG007P01.

ATH271731   AJ271731     1332bp    RNA      PLN      01-JUN-2000
     Arabidopsis thaliana mRNA for branched-chain amino acid transaminase
      (bcat2 gene)
     bcat2 gene; branched-chain amino acid transaminase; bcat2.

ATH271732   AJ271732     1286bp    RNA      PLN      01-JUN-2000
     Arabidopsis thaliana mRNA for branched-chain amino acid transaminase
      (bcat4 gene)
     bcat4 gene; branched-chain amino acid transaminase; bcat4.

ATH276123   AJ276123     1368bp    RNA      PLN      01-JUN-2000
     Arabidopsis thaliana mRNA for branched-chain amino acid transaminase
      (bcat1 gene)
     bcat1 gene; branched-chain amino acid transaminase; bcat1.

ATH276124   AJ276124     1539bp    RNA      PLN      01-JUN-2000
     Arabidopsis thaliana mRNA for branched-chain amino acid transaminase 3
      (bcat3 gene)
     bcat3 gene; branched-chain amino acid transaminase 3; bcat3.

AF207994    AF207994     2304bp    mRNA     PLN      02-JUN-2000
     Arabidopsis thaliana acyl-CoA oxidase ACX3 (ACX3) mRNA, complete cds.
     ACX3; acyl-CoA oxidase ACX3.

AF223949    AF223949     2165bp    mRNA     PLN      02-JUN-2000
     Arabidopsis thaliana amidase mRNA, complete cds.
     amidase.

AF229850    AF229850     2972bp    DNA      PLN      02-JUN-2000
     Arabidopsis thaliana ferritin (Fer1) gene, complete cds.
     Fer1; ferritin.

AF236376    AF236376      542bp    mRNA     PLN      02-JUN-2000
     Arabidopsis thaliana IPS1 mRNA, complete sequence.
     IPS1.

AF239718    AF239718     4013bp    DNA      PLN      02-JUN-2000
     Arabidopsis thaliana SGS2 gene, complete cds.
     SGS2.

AF239719    AF239719     2254bp    DNA      PLN      02-JUN-2000
     Arabidopsis thaliana SGS3 gene, complete cds.
     SGS3.

AC069470    AC069470   291898bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome I clone IGF-F13E17, *** SEQUENCING IN
      PROGRESS ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

AC069471    AC069471   127042bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome I clone IGF-F13K9, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069472    AC069472    52211bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome III clone BAC pool-F28J15, *** SEQUENCING
      IN PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069473    AC069473    85822bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome III clone BAC pool-T21B14, *** SEQUENCING
      IN PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069474    AC069474   106390bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome III clone BAC pool-T2E22, *** SEQUENCING
      IN PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.


=========== Updated Sequence Features/Annotations  =============

AC000348    AC000348   111566bp    DNA      PLN      20-MAY-2000
     Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I,
      complete sequence.
     HTG.

D85029      D85029     1245bp    ss-mRNA  PLN      31-MAY-2000
     Arabidopsis thaliana mRNA for geranylgeranyl pyrophosphate synthase,
      partial cds.
     geranylgeranyl pyrophosphate synthase.

AC002328    AC002328   109171bp    DNA      PLN      13-MAY-2000
     Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I,
      complete sequence.
     HTG.

AB005231    AB005231    79537bp    DNA      PLN      27-MAY-2000
     Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBB18.
     HTG.

AB000835    AB000835     3250bp    DNA      PLN      31-MAY-2000
     Arabidopsis thaliana gene for geranyl geranyl pyrophosphate synthase,
      complete cds.
     geranyl geranyl pyrophosphate synthase; GGPS6.

AF091843    AF091843     1485bp    mRNA     PLN      25-MAY-2000
     Arabidopsis thaliana aminoalcoholphosphotransferase (AAPT1) mRNA,
      complete cds.
     AAPT1; aminoalcoholphosphotransferase.

AF091844    AF091844     1314bp    mRNA     PLN      25-MAY-2000
     Arabidopsis thaliana aminoalcoholphosphotransferase (AAPT2) mRNA,
      complete cds.
     AAPT2; aminoalcoholphosphotransferase.

AC006193    AC006193   118335bp    DNA      PLN      28-MAY-2000
     Arabidopsis thaliana chromosome I BAC F13O11 genomic sequence, complete
      sequence.
     HTG; F13O11.1; F13O11.2; F13O11.3; Putative membrane related protein;
      F13O11.4; alpha1 tubulin; F13O11.5; F13O11.6; Similar to glucan
      endo-1,3-beta-glucosidase precursor; F13O11.7; F13O11.8; Ammonium
      transporter ATM1;2; F13O11.9; similar to translational activator;
      F13O11.10; F13O11.11; F13O11.12; F13O11.13; F13O11.14; F13O11.15; RNA
      polymerase sigma subunit 1; F13O11.16; F13O11.17; F13O11.18; F13O11.19;
      Putative Cytochrome P450; F13O11.20; Similar to Flavonol
      3-O-Glucosyltransferase; F13O11.21; F13O11.22; F13O11.23; Putative
      cytochrome P450; F13O11.24; F13O11.25; F13O11.26; gamma-tocopherol
      methyltransferase; F13O11.27; F13O11.28; similar to CGI-13 protein;
      F13O11.29; F13O11.30.

AC007152    AC007152    90388bp    DNA      HTG      24-MAY-2000
     Arabidopsis thaliana chromosome I clone F1O19, *** SEQUENCING IN PROGRESS
      ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC007945    AC007945    80472bp    DNA      PLN      26-MAY-2000
     Genomic sequence for Arabidopsis thaliana BAC F28C11 from chromosome I,
      complete sequence.
     HTG.

AC008007    AC008007   130235bp    DNA      PLN      25-MAY-2000
     Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I,
      complete sequence.
     HTG; F12M16.1; F12M16.2; F12M16.3; F12M16.4; F12M16.5; F12M16.6;
      F12M16.7; F12M16.8; F12M16.9; F12M16.10; F12M16.11; F12M16.12; tRNA-Ile;
      F12M16.13; F12M16.14; F12M16.15; F12M16.16; F12M16.17; F12M16.18;
      F12M16.19; F12M16.20; F12M16.21; F12M16.22; F12M16.23; F12M16.24;
      F12M16.25; F12M16.26; F12M16.27; F12M16.28; F12M16.29; tRNA-Cys;
      F12M16.30.

AB015859    AB015859      588bp    mRNA     PLN      25-MAY-2000
     Arabidopsis thaliana psbS mRNA for photosystem II 22 kDa protein, partial
      cds.
     photosystem II 22 kDa protein; psbS.

AB015860    AB015860      295bp    mRNA     PLN      25-MAY-2000
     Arabidopsis thaliana psaE mRNA for photosystem I subunit PSI-E, partial
      cds.
     photosystem I subunit PSI-E; psaE.

AB015861    AB015861      512bp    mRNA     PLN      25-MAY-2000
     Arabidopsis thaliana psaL mRNA for photosystem I subunit PSI-L, partial
      cds.
     photosystem I subunit PSI-L; psaL.

AB015862    AB015862      240bp    mRNA     PLN      25-MAY-2000
     Arabidopsis thaliana mRNA for phytochrome-regulated gene product, partial
      sequence.

AB030730    AB030730     1701bp    DNA      PLN      27-MAY-2000
     Arabidopsis thaliana AZF2 gene for Cys2/His2-type zinc finger protein 2,
      complete cds.
     Cys2/His2-type zinc finger protein 2; AZF2.

AB030731    AB030731      735bp    DNA      PLN      27-MAY-2000
     Arabidopsis thaliana AZF1 gene for Cys2/His2-type zinc finger protein 1,
      partial cds.
     Cys2/His2-type zinc finger protein 1; AZF1.

AB030732    AB030732      579bp    DNA      PLN      27-MAY-2000
     Arabidopsis thaliana AZF3 gene for Cys2/His2-type zinc finger protein 3,
      partial cds.
     Cys2/His2-type zinc finger protein 3; AZF3.

AC011810    AC011810   103157bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete
      sequence.
     HTG.

AC013430    AC013430    95769bp    DNA      PLN      26-MAY-2000
     Genomic sequence for Arabidopsis thaliana BAC F3F9 from chromosome I,
      complete sequence.
     HTG; F3F9.1; F3F9.2; F3F9.3; F3F9.4; F3F9.5; F3F9.6; F3F9.7; F3F9.8;
      F3F9.9; F3F9.10; F3F9.11; F3F9.12; F3F9.13; F3F9.14; F3F9.15; F3F9.16;
      F3F9.17; F3F9.18; F3F9.19; F3F9.20; tRNA-Met; F3F9.21; F3F9.22.

AC013453    AC013453    91001bp    DNA      PLN      25-MAY-2000
     Arabidopsis thaliana chromosome I BAC T16N11 genomic sequence, complete
      sequence.
     HTG; Putative adenine nucleotide translocase; T16N11.1; T16N11.2;
      Putative ABC transporter; T16N11.3; T16N11.4; T16N11.5; GA4 protein;
      T16N11.6; T16N11.7; Putative cyclin; T16N11.8; auxin-induced protein
      AUX2-27; T16N11.9; T16N11.10; T16N11.11; T16N11.12; T16N11.13;
      T16N11.14; T16N11.15; T16N11.16.

AF210731    AF210731     2130bp    mRNA     PLN      30-MAY-2000
     Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, complete cds.
     SCL1; scarecrow-like 1.

AF210732    AF210732     1634bp    mRNA     PLN      30-MAY-2000
     Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
     SCL21; scarecrow-like 21.

AF219222    AF219222     1342bp    DNA      PLN      22-MAY-2000
     Arabidopsis thaliana homocysteine S-methyltransferase AtHMT-1 (AtHMT-1)
      gene, complete cds.
     homocysteine S-methyltransferase AtHMT-1; AtHMT-1.

AF219223    AF219223     1391bp    DNA      PLN      22-MAY-2000
     Arabidopsis thaliana homocysteine S-methyltransferase AtHMT-2 (AtHMT-2)
      gene, complete cds.
     homocysteine S-methyltransferase AtHMT-2; AtHMT-2.

AF206324    AF206324     2431bp    mRNA     PLN      30-MAY-2000
     Arabidopsis thaliana putative DNA binding protein (tso1) mRNA, tso1-3
      allele, complete cds.
     tso1; putative DNA binding protein.

AF151217    AF151217     1608bp    mRNA     PLN      30-MAY-2000
     Arabidopsis thaliana proline-rich protein (PRP4) mRNA, complete cds.
     PRP4; proline-rich protein.

AC022521    AC022521   121668bp    DNA      PLN      20-MAY-2000
     Arabidopsis thaliana chromosome I BAC T14P4 genomic sequence, complete
      sequence.
     HTG.

AC024226    AC024226   122905bp    DNA      HTG      20-MAY-2000
     Arabidopsis thaliana chromosome 5 clone T32B03, *** SEQUENCING IN
      PROGRESS ***, 22 unordered pieces.
     HTG; HTGS_PHASE1.

AC025813    AC025813    89390bp    DNA      HTG      31-MAY-2000
     Arabidopsis thaliana chromosome I clone F15H4, *** SEQUENCING IN PROGRESS
      ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC027134    AC027134   102184bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome I clone F13B4, *** SEQUENCING IN PROGRESS
      ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC027656    AC027656    99328bp    DNA      HTG      20-MAY-2000
     Arabidopsis thaliana chromosome 1 clone F21F23, *** SEQUENCING IN
      PROGRESS ***, 2 ordered pieces.
     HTG; HTGS_PHASE2.

AC027665    AC027665    99231bp    DNA      PLN      26-MAY-2000
     Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I,
      complete sequence.
     HTG.

AC034256    AC034256    77521bp    DNA      PLN      27-MAY-2000
     Arabidopsis thaliana chromosome 1 BAC F7H2 sequence, complete sequence.
     HTG.

AC034257    AC034257    98950bp    DNA      PLN      01-JUN-2000
     Arabidopsis thaliana chromosome I BAC F11A6 genomic sequence, complete
      sequence.
     HTG.

AC036106    AC036106    51811bp    DNA      HTG      25-MAY-2000
     Arabidopsis thaliana chromosome III clone TAMU-T8E24, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC037424    AC037424    76619bp    DNA      HTG      20-MAY-2000
     Arabidopsis thaliana chromosome I clone IGF-F19K6, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC025416    AC025416   118374bp    DNA      PLN      26-MAY-2000
     Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I,
      complete sequence.
     HTG.

AC051625    AC051625   119039bp    DNA      HTG      20-MAY-2000
     Arabidopsis thaliana chromosome 5 clone F19N02, *** SEQUENCING IN
      PROGRESS ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

AC051626    AC051626    96050bp    DNA      PLN      27-MAY-2000
     Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V,
      complete sequence.
     HTG.

AC051627    AC051627    85746bp    DNA      PLN      22-MAY-2000
     Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V,
      complete sequence.
     HTG.

AC051631    AC051631    97366bp    DNA      HTG      20-MAY-2000
     Arabidopsis thaliana chromosome I clone TAMU-T2J15, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC061957    AC061957    66131bp    DNA      PLN      20-MAY-2000
     Arabidopsis thaliana chromosome 1 BAC F22L4 sequence, complete sequence.
     HTG.

AC064879    AC064879   109180bp    DNA      PLN      20-MAY-2000
     Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete
      sequence.
     HTG.

AC067971    AC067971   173520bp    DNA      HTG      27-MAY-2000
     Arabidopsis thaliana chromosome 1 clone F10K1, *** SEQUENCING IN PROGRESS
      ***, 2 ordered pieces.
     HTG; HTGS_PHASE2.

AC068143    AC068143    36844bp    DNA      PLN      01-JUN-2000
     Arabidopsis thaliana chromosome 1 BAC T2D23 sequence, complete sequence.
     HTG.

AC068562    AC068562    87048bp    DNA      HTG      26-MAY-2000
     Arabidopsis thaliana chromosome 1 clone T16E15, *** SEQUENCING IN
      PROGRESS ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

AC068655    AC068655    96926bp    DNA      HTG      20-MAY-2000
     Arabidopsis thaliana chromosome 5 clone F17K4, *** SEQUENCING IN PROGRESS
      ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

AC063973    AC063973   155386bp    DNA      HTG      27-MAY-2000
     Arabidopsis thaliana chromosome 5 clone T6F08, *** SEQUENCING IN PROGRESS
      ***, 19 unordered pieces.
     HTG; HTGS_PHASE1.

AC068901    AC068901   102744bp    DNA      HTG      27-MAY-2000
     Arabidopsis thaliana chromosome I clone IGF-F1O3, *** SEQUENCING IN
      PROGRESS ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AC068324    AC068324    96219bp    DNA      HTG      25-MAY-2000
     Arabidopsis thaliana chromosome I clone IGF-F13A11, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069273    AC069273    53025bp    DNA      HTG      24-MAY-2000
     Arabidopsis thaliana chromosome I clone IGF-F28P5, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069251    AC069251   139913bp    DNA      HTG      31-MAY-2000
     Arabidopsis thaliana chromosome 1 clone F2D10, *** SEQUENCING IN PROGRESS
      ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

AC069252    AC069252    82717bp    DNA      HTG      25-MAY-2000
     Arabidopsis thaliana chromosome 1 clone F2E2, *** SEQUENCING IN PROGRESS
      ***, 9 unordered pieces.
     HTG; HTGS_PHASE1.


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