You may want to try out a "dot matrix" program for this. A dot matrix plot
of your sequence against itself will essentially help you locate reapeats.
Try the ANTHEPROT program downloadable from
At 11:34 PM 5/5/00 +0100, Ahmed Fadiel wrote:
>>I hope if some one provides me with a list or any available software
>that detect oligos with high frequency in given DNA sequence.
>I need to know the programs that detect any repeats without having the
>repeat characters through impute or database.
>I am trying to gather the software that execute this job.
Dr. Hiranya Sankar Roychowdhury
GENE LAB/ EPPWS
New Mexico State University
Las Cruces, NM 88003
Ph. (505) 646-5785
hroychow at nmsu.edu