noval repeat

Ahmed Fadiel afadiel at bioinfo.sickkids.on.ca
Thu May 11 14:16:36 EST 2000


I do not why the site is so slow and most of the time the download is not
complete?

"Hiranya S. Roychowdhury" wrote:

>  You may want to try out a "dot matrix" program for this. A dot matrix plot
>  of your sequence against itself will essentially help you locate reapeats.
>  Try the ANTHEPROT program downloadable from
>  "http://pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_server.html"
>
>  At 11:34 PM 5/5/00 +0100, Ahmed Fadiel wrote:
>  >
>  >Hi,
>  >
>  >I hope if some one provides me with a list or any available software
>  >that detect oligos with high frequency in given DNA sequence.
>  >I need to know the programs that detect any repeats without having the
>  >repeat characters through impute or database.
>  >I am trying to gather the software that execute this job.
>  >
>  >A.F.
>  >
>  >---
>  >
>  >
>
>  Dr. Hiranya Sankar Roychowdhury
>  GENE LAB/ EPPWS
>  New Mexico State University
>  Las Cruces, NM 88003
>  Ph. (505) 646-5785
>  hroychow at nmsu.edu
>
>  ---

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