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5' UTR's in At

Sue Rhee rhee at acoma.Stanford.EDU
Fri May 19 12:29:07 EST 2000

 From the Arabidopsis UTRs in GenBank, (of which there are about ~450), the
average size for 5'UTR is 131 bp and that for 3'UTR is 198 bp. The
distribution is pretty interesting (much more variable for the 5'UTR).

Please note that this info is not in TAIR yet. We're currently developing
the database to house this type of sequence info so that you should be
able to get the information yourself from querying the db. We hope to be
able to set it up by Sept.

Anyone interested in the files I used to get the average size, please let
me know & and I can send them as attachments.

Let me know if you have any more questions.


>  >On 18 May 2000 jdfriesner at ucdavis.edu wrote:
>  >
>  >>  I'm trying to find out if anyone knows an average size of 5' UTR's in
>  >>  Arabidopsis.
>  >>  Joanna Friesner

Sue Rhee                         	rhee at acoma.stanford.edu
The Arabidopsis Information Resource	URL: www.arabidopsis.org
Carnegie Institution of Washington	FAX: +1-650-325-6857
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Please note that the AtDB project has officially ended and will go
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(www.arabidopsis.org) at your earliest convenience.

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