Proteins

varsha raja rnavarsha at yahoo.com
Sat Sep 21 13:37:49 EST 2002


Dear Arabidopsis Group Users:

Sachin Gandhi and Varsha Raja

We have designed a new small programme if someone is
interested to blast multiple protein sequences
together.

Input should be a file containing multiple protein
sequences in FASTA format.

#### Programme starts:


print ("Enter input file Name : ");
chomp($FileName = <STDIN>);

print ("Enter Output file name :");
chomp($OutFile = <STDIN>);

print "Process Started...\n";

open (READ,"<$FileName") or die "Cannot open input
file : $FileName\n\n";
open (WRITE,">$OutFile") or die "Cannot open output
file : $OutFile\n\n";

while (<READ>)
{
	chomp($Line = $_);

	if ($Line !~ /\>^/)
	{
		$Line =~ s/\s+|[1-9]+//ig;
		print WRITE $Line;
	}
}

close (READ);
close (WRITE);

print "Process Completed...\n\n";


#### Programme ends.


Many thanks,
Sincerely,
VARSHA



=====
Varsha Raja,Faculty, Bioinformatics,Xintra, Suite# 600
55,Scarborough Town Centre Court,Toronto,OntariM1P4X4,CANADA
Voice: 1-416-290-6044,Fax: 1-416-290-6110 , Personal SMS-Box Address 
is: http://mobile.icq.com/166604110
Web:http://xintra.dhs.org/varsha.html
"Om Bhurbhurva Swah! Tasta Viturva Renya
   Bhargo,Devatsya,Dhimahi,Dhiyoyonaha Prachodayata!"

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