[Arabidopsis] RE: Ws- Col polymorphisms

Nicholas Provart nicholas.provart at utoronto.ca
Mon Apr 24 13:58:30 EST 2006

Hello everyone,

If you are interested in identifying SNPs that are snip-SNPs (i.e. cause
differential restriction endonuclease cutting, for CAPS markers) between the
96 accessions in Magnus Nordborg's data set (2005), or in the Jander et al.
(2002) data set (just Col - Ler), try MarkerTracker. 

Features include the automatic generation of the appropriate primers via the
Primer3 program and 'virtual gels' to aid in the selection of optimal


This resource will should prove useful for 'natural variomics' in
Arabidopsis. Feedback is welcome!


Nicholas Provart, Ph.D.
Assistant Professor, Plant Bioinformatics.
Faculty Member, Program in Proteomics and Bioinformatics.
Rm 3051, Dept. of Botany, University of Toronto.
25 Willcocks St., Toronto, ON. M5S 3B2. CANADA.

Tel. (+1) (416) 978-7141, Fax. (+1) (425) 675-7036
URL. http://www.botany.utoronto.ca/faculty/provart/
Webtools. http://bbc.botany.utoronto.ca   
email. provart at botany.utoronto.ca
TTC. Spadina LRT, Willcocks St.

More information about the Arab-gen mailing list