[Arabidopsis] Searching the Whole Arabidopsis Genome for a Motif
Siobhan A. Braybrook
(by sabraybrook from ucdavis.edu)
Sat Apr 7 20:28:12 EST 2007
I am trying to search the whole Arabidopsis genome for a short DNA
sequence, to obtain the genomic co-coordinates for every instance.
I want to search everything, regardless of classification as gene,
intergenic, upstream, etc.
And I would like to get back Chromomsonal nucleotide positions, not
positions relative to an AGI locus number.
I have tried several approaches at TAIR with some problems:
The only way to search the whole genome is via the BAC clones.
PatMatch gives you positions relative to AGI loci.
Any help is appreciated!
S. A. Braybrook
Graduate Student, Harada Lab
Section of Plant Biology
University of California, Davis
Davis, CA 95616
The time is always right, to do what is right.
- Martin Luther King, Jr.
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