[Arabidopsis] Arabidopsis eFP Browser webservices from the BAR
(by nicholas.provart from utoronto.ca)
Fri May 9 12:30:31 EST 2008
Two webservices are now available from the Bio-Array Resouce:
getAGI_SubCellLocalisationImage, and getAGI_eFPImage.
getAGI_SubCellLocalisationImage will return a Cell eFP Browser image for the
predicted and documented subcellular localizations of any one of more than
24000 Arabidopsis genes, as documented in Heazlewood et al.'s (2007) SUBA
database (NAR 35:D213-8).
getAGI_eFPImage will return an eFP Browser image showing where your gene of
interest is being expressed in gene expression compendia from the
AtGenExpress Consortium and from other labs worldwide: there are Chemical,
Hormone, Developmental Map, Tissue Specific, Natural Variation, Seed, Biotic
Stress, Abiotic Stress, and Light Series compendia encompassing more than
2000 Affymetrix data sets across ~24k genes.
You can access BAR webservice through BioMOBY at
ID: enter any AGI
Many thanks to Chris Town and colleagues at TIGR/JCVI for a workshop on how
to set up webservices, and to Hardeep Nahal for her programming efforts to
enable webservices for the BAR.
Nicholas Provart, PhD
Assistant Professor, Plant Bioinformatics & Systems Biology
Director, Graduate Program in Genome Biology and Bioinformatics
Member, Centre for the Analysis of Genome Evolution and Function
Rm 3051, Dept. of Cell and Systems Biology, Uni. Toronto
25 Willcocks St., Toronto, ON. M5S 3B2. CANADA
Tel. (+1) (416) 978-7141, Fax. (+1) (416) 978-5878
Arabidopsis Tools. http://www.bar.utoronto.ca
email. nicholas.provart from utoronto.ca
TTC. Spadina LRT, Willcocks St.
More information about the Arab-gen