[Arabidopsis] Arabidopsis Sha Vs.Tsu-1 markers
(by Olivier.Loudet from versailles.inra.fr)
Tue Sep 4 17:52:12 EST 2012
You may want to use the ANATool website for that purpose
which contains genotypes for 341 SNP markers x 591 accessions (including
Sha and Tsu-1) and tools to interrogate this dataset in different useful
ways. For example you can find the minimal marker set to discriminate
between 2 or more accessions, or the minimal fingerprint of one accession
(within this matrix).
This is based on Simon et al., Plant J., 2012:
Depending on your exact goal, of course Sha and Tsu-1 are also included
among the 1001 accessions currently being sequenced:
PS: In any case, always double-check the genotypes of accessions on your
seed lot, as there will always be (at least) punctual differences between
Le 04/09/2012 10:09,gat kr écrit:
>I was wondering if anyone knows a good, reliable PCR based marker to
>distinguish between Sha and Tsu-1.
>Alternatively, does anybody know of a web based SNP tool that has these 2
>ecotypes in its database?
>Arab-gen mailing list
>Arab-gen from net.bio.net
INRA, National Institute for Agricultural Research
IJPB, Versailles, France
V.A.S.T group -- Variation and Abiotic Stress Tolerance
Mail: Olivier.Loudet from versailles.inra.fr
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