[Arabidopsis] cis-element analysis of a gene
(by chiangscn from gmail.com)
Thu Jan 17 03:48:29 EST 2013
hello At colleagues,
For cis-element identification in the promoter and/or 5'UTR regions of
an At gene, for example, W-box，which is (T)TGACC/T, what if no
(T)TGACC/T is detected in the promoter/5'UTR， but G/AGTCA(A) found in
multiple sites on the antisense strand? does this mean that this gene
has the W-box element? I often found that PLACE or PlantCARE failed to
identify the latter.
seconly, if no W-box is identified in the promoter region of a gene,
but it exists in the 5'UTR or a leader intron sequence, does this mean
this gene has the W-box element and could be also regulated by an
unknown WRKY TF?
thanks for your reply?
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