Software choice? sequencher, phrap/phred/consed, staden?

Scottie Adams mbcf at Aldus.NorthNet.org
Mon Aug 12 10:18:57 EST 1996


>Do you have opinions to share on the best choice(s) of 

>software for small-scale autosequencing?  We have recently acquired

>Sequencher, Phrap/Phred/Consed/etal, and Staden package,

>all of which can handle ABI and SCF trace data, do base calling

>and assembly.  But it will take some time to compare and evaluate

>these, so your experiences would be valuable to us and others

>starting with such software.

>

>Thanks,  Don

>

>--

>-- d.gilbert--biocomputing--indiana
u--bloomington--gilbertd at bio.indiana.edu




Don - I am only familiar with Sequencher, but as a member of the ABRF
DNA Sequencing Committee, we used Sequencher to compare and analyze 73
DNA chromatograms from ABI, ALF and Licor - and it was quite easy to
use and handled the large load gracefully. Hope this helps.   Scottie 
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Scottie Adams aka Pamela Scott Adams

Molecular Biology Core Facility

W. Alton Jones Cell Science Center

10 Old Barn Road

Lake Placid, NY    12946

Phone:  518-523-1276

Fax:    518-523-1849

Email:  mbcf at northnet.org

        




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