software for sequence repeats

Christina Spolsky spolsky at acnatsci.org
Sat Jun 12 14:25:58 EST 1999


I have about 50 sequences of 1000+ np. They form several families of
sequences, so I suppose each family represents some complex repetitive
structure. I want to look for direct and inverted repeats in the sequences.
What software is available for finding repeats; what are the 
advantages/disadvantages of various methods?




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