Alignment of sequences of dif length

T. Jeffrey Keen t.j.keen at
Tue Mar 9 18:21:49 EST 1999

'Dialign 2' seems to be useful for this sort of problem


in article <7b7fc1$8jq at>, Alan Wilton <dna at> wrote:

> Dear sequencers,
> Can anyone recommend a program that will extract a region of high
> similarity from a bunch of sequences of different length and then do
> multiple alignment on them?
> Even an 'in house' protocol on how to go from BLAST matches,
> then extracting regions of similarity to put into a
> multiple alignment program would do?

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