ALF+Phred

Paul Weston pweston at hgmp.mrc.ac.uk
Fri Jul 21 03:29:50 EST 2000


In article <8l83q5$q2q$1 at mercury.hgmp.mrc.ac.uk>,
	"[iso-8859-1] Istv=E1n Nagy" <inagy at abc.hu> writes:
> We are buying an ALF Express sequencers that we will mainly use for
> fragment analysis (microsatellite polymorphism) and occasionally for
> sequencing.
> I am wondering, whether Phred would be a real alternative of the
> commercial sequencing software from Pharmacia.

So long as you can output chromatographs you should be fine.  You can
use the phredPhrap script supplied with consed if you want to use 
consed, and Pregap4 offers a Phred interface if you would rather
use Gap for finishing.

Paul

-- 
Paul Weston: pweston at hgmp.mrc.ac.uk
Not speaking for the MRC          








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