Alignment Software

[James VanEe]

Trying not to play fast and loose on my language: It may be more 
precise to say that the consensus calls depend on the quality scores. 
I'm less certain how important they are to the phrap's actual 
alignment algorithm.

>
>Now a relevant question:  How is Phred/Phrap actually going to do on
>LiCor Data?  the assembly depends on the phred quality calls and I
>would like (well, need) to know how reasonable those calls are for
>li-cor data.
>-James
-------------------------------------------------------------------
James VanEe                              Phone: (607) 254-4862
BioResource Center
Computing Facilty
170/171 Biotech Bldg                       Fax: (607) 254-4847
Cornell University
Ithaca, NY 14853                 www: http://brcweb.bio.cornell.edu
-------------------------------------------------------------------


---