Alignment Software

James VanEe jiv2 at cornell.edu
Tue Sep 26 11:41:22 EST 2000


Trying not to play fast and loose on my language: It may be more 
precise to say that the consensus calls depend on the quality scores. 
I'm less certain how important they are to the phrap's actual 
alignment algorithm.

>
>Now a relevant question:  How is Phred/Phrap actually going to do on
>LiCor Data?  the assembly depends on the phred quality calls and I
>would like (well, need) to know how reasonable those calls are for
>li-cor data.
>-James
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James VanEe                              Phone: (607) 254-4862
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