Consed and cap3

Phillip San Miguel pmiguel at purdue.edu
Tue Mar 6 10:18:15 EST 2001


    We just switched from version 10 to 11 of Consed. v 10 could read cap3 ace
files. v 11 chokes on cap3 ace files. I get the error:

exception thrown: File 'assembly3.cpp' , line 108 no BS lines for contig Contig1

This seems odd to me, since the Consed documentation says that the BS tag is a
component of the new ace file format--but Consed can use either old or new ace
files.

    So does the new version of Consed abandon the old ace file format? Anyone
have a work-around for this problem?

Phillip SanMiguel
Purdue Genomics Core Facility


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