tandem repeats

Olivier Elemento elemento at club-internet.fr
Fri Apr 12 07:49:34 EST 2002


hi,
I think it depends on the size of the repeats you want to searh for.
If the size is not too large, these programs should do well :
- TRF (tandem repeats finder) written by Dr Gary Benson
- mreps written by Gregory Kucherov
- etandem and equicktandem from the EMBOSS package
(http://www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/etandem.html)

Olivier Elemento.


venkat <vvenkatagr at yahoo.com> wrote in message news:<a8g1q0$j95$1 at mercury.hgmp.mrc.ac.uk>...
> Hai,
>
>  Can someone tell me what are the latest algorithms used for finding tandem repeats.
>
> Thanks in advance,
> Venkat
>
> ---

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