New listing of software available from the EMBL File Server

"Rainer Fuchs ", EMBL FUCHS at embl.bitnet
Thu Feb 1 10:14:00 EST 1990


During the last month we have received quite a lot of new software submissions
to the EMBL File Server. Included you will find a list of all programs now
available from the server. For more information, send a mail message ( *no*
interactive message !) to NETSERV at EMBL, containing the lines:
HELP
HELP SOFTWARE

New programs:

CIP (DOS)
Clones (DOS)
ElBaMap (DOS)
FAST (with CHAMP database) (DOS)
Ligate (DOS)
ProNet (DOS)
MiniMM (Mac)
RefStack (Mac)
The GenBank Software Clearinghouse Catalog (kindly provided by GenBank).


Rainer Fuchs, Ph.D.
EMBL Data Library
fuchs at embl.bitnet


Directory of MS DOS Molecular Biology Software on EMBL File Server
------------------------------------------------------------------

To receive files from this directory use the command:
                     GET DOS_SOFTWARE:filename.ext

(a) Molecular Biology Software

filename             ALX3$.UUE
version              1.0
size                 140 k
compressed           PAK
ASCII conversion     UUE
author               Gotoh O.
description          Alignment of three protein or DNA sequences
literatur            J. Theor. Biol. 121 (1986), 327-337
source code          -
sw requirements      -
hw requirements      -

filename             CIP$.UUE
version              -
size                 65 k
compressed           PAK
ASCII conversion     UUE
author               Jenson, H. B.
description          Calculation of reaction conditions for dephosphorylation
literatur            -
source code          -
sw requirements      -
hw requirements      -

filename             CLONES$.UAA
version              -
size                 190 k
compressed           PAK
ASCII conversion     UUE (split)
author               Jenson, H. B.
description          Management of clones, strains, libraries etc. databases
                     (Part 1 of 2)
literatur            BioTechniques 7 (1989), 590-592
source code          -
sw requirements      -
hw requirements      -

filename             CLONES$.UAB
version              -
size                 45 k
compressed           PAK
ASCII conversion     UUE (split)
author               Jenson, H. B.
description          Management of clones, strains, libraries etc. databases
                     (Part 2 of 2)
literatur            BioTechniques 7 (1989), 590-592
source code          -
sw requirements      -
hw requirements      -

filename             CMOLECUL.UUE
version              May 87
size                 70 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R. (Cedergren R.)
description          graphics output of PCFOLD result files
literatur            Nucl. Acids Res. 10 (1982), 8351-8356
source code          available as MOLECSRC.UUE
sw requirements      -
hw requirements      CGA card

filename             ELBAMAP.UUE
version              2.2
size                 55 k
compressed           PAK
ASCII conversion     UUE
author               King G. J.
description          Management of electrophoresis banding patterns
literatur            CABIOS 5 (1989), 313-317
source code          -
sw requirements      -
hw requirements      EGA card

filename             EMOLECUL.UUE
version              May 87
size                 70 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R. (Cedergren R.)
description          graphics output of PCFOLD result files
literatur            Nucl. Acids Res. 10 (1982), 8351-8356
source code          available as MOLECSRC.UUE
sw requirements      -
hw requirements      EGA card

filename             EZ-FIT$.UUE
version              1.1
size                 170 k
compressed           PAK
ASCII conversion     UUE
author               Perella F. W.
description          Calculation of enzyme and receptor kinetics
literatur            Anal. Biochem. 174 (1989), 437-447
source code          -
sw requirements      -
hw requirements      CGA card

filename             FAST$.UUE
version              -
size                 195 k
compressed           PAK
ASCII conversion     UUE
author               Facchiano, A.
description          Protein structure analysis
literatur            CABIOS 5 (1989), 299-303
source code          -
sw requirements      -
hw requirements      -

filename             GEL$.UUE
version              17.2.89
size                 50 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R.
description          Calculation of DNA restriction fragment sizes
literatur            Anal. Biochem. 115 (81), 113-122
source code          Pascal
sw requirements      (Turbo Pascal for recompiling)
hw requirements      -

filename             HMOLECUL.UUE
version              May 87
size                 70 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R. (Cedergren R.)
description          graphics output of PCFOLD result files
literatur            Nucl. Acids Res. 10 (1982), 8351-8356
source code          available as MOLECSRC.UUE
sw requirements      -
hw requirements      Hercules card

filename             HYDRASC$.UUE
version              1
size                 30 k
compressed           PAK
ASCII conversion     UUE
author               Penttila T. J.
description          Contour map for two polypeptide sequences.
                     Regions with similar hydropathic properties and second.
                     structure properties are plotted.
literatur            CABIOS, in prep.
source code          -
sw requirements      MATLAB-PC
hw requirements      Math. co-processor, >2M RAM

filename             LIGATE$.UUE
version              -
size                 75 k
compressed           PAK
ASCII conversion     UUE
author               Jenson, H. B.
description          Calculation of reaction conditions for ligation
literatur            BioTechniques 5 (1987), 729-730
source code          -
sw requirements      -
hw requirements      -

filename             MOLECSRC.UUE
version              May 87
size                 70 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R. (Cedergren R.)
description          Source code for *MOLECUL.UUE
literatur            Nucl. Acids Res. 10 (1982), 8351-8356
source code          Pascal
sw requirements      Turbo Pascal
hw requirements      -

filename             MOTIF$.UUE
version              - (bug fix with plain ASCII sequences)
size                 45 k
compressed           PAK
ASCII conversion     UUE
author               Giles I.
description          Motif searching program
literatur            CABIOS 5 (1989), 227-232
source code          C
sw requirements      (Turbo C for recompiling)
hw requirements      -

filename             OLIGO.UUE
version              1.0
size                 105 k
compressed           PAK
ASCII conversion     UUE
author               Beadles K.
description          Oligo-directed single amino acid substitution
literatur            -
source code          -
sw requirements      -
hw requirements      -

filename             PATTERN$.UUE
version              -
size                 55 k
compressed           PAK
ASCII conversion     UUE
author               Giles I.
description          Pattern searching program
literatur            CABIOS 5 (1989), 227-232
source code          C
sw requirements      (Turbo C for recompiling)
hw requirements      -

filename             PCFOLD$.UUE
version              4.0
size                 160 k
compressed           PAK
ASCII conversion     UUE
author               Zuker M.
description          RNA folding
literatur            Meth. Enzymology 180 (1989), 262-288
source code          Fortran, Asm
sw requirements      (Compiler for recompiling)
hw requirements      -

filename             PLASMID.UUE
version              1.1
size                 75 k
compressed           PAK
ASCII conversion     UUE
author               Lipsick J.
description  



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