Molecular Biology Software from EMBL File Server

["Rainer Fuchs ", EMBL]

Here is the most recent directory listing of molecular biological programs
available from the EMBL File Server. We provide software for MS-DOS, VAX/VMS
and Apple Macintosh.

For introductory help send a mail message to NETSERV at EMBL containing the
lines
HELP
HELP SOFTWARE

Inquiries and submissions please direct to SOFTWARE at EMBL.

Directory of MS DOS Molecular Biology Software on EMBL File Server
------------------------------------------------------------------

To receive files from this directory use the command:
                     GET DOS_SOFTWARE:filename.ext

(a) Molecular Biology Software

filename             ALX3$.UUE
version              1.0
size                 140 k
compressed           PAK
ASCII conversion     UUE
author               Gotoh O.
description          Alignment of three protein or DNA sequences
literatur            J. Theor. Biol. 121 (1986), 327-337
source code          -
sw requirements      -
hw requirements      -

filename             CMOLECUL.UUE
version              May 87
size                 70 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R. (Cedergren R.)
description          graphics output of PCFOLD result files
literatur            Nucl. Acids Res. 10 (1982), 8351-8356
source code          available as MOLECSRC.UUE
sw requirements      -
hw requirements      CGA card

filename             EMOLECUL.UUE
version              May 87
size                 70 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R. (Cedergren R.)
description          graphics output of PCFOLD result files
literatur            Nucl. Acids Res. 10 (1982), 8351-8356
source code          available as MOLECSRC.UUE
sw requirements      -
hw requirements      EGA card

filename             HMOLECUL.UUE
version              May 87
size                 70 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R. (Cedergren R.)
description          graphics output of PCFOLD result files
literatur            Nucl. Acids Res. 10 (1982), 8351-8356
source code          available as MOLECSRC.UUE
sw requirements      -
hw requirements      Hercules card

filename             MOLECSRC.UUE
version              May 87
size                 70 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R. (Cedergren R.)
description          Source code for MOLECULE
literatur            Nucl. Acids Res. 10 (1982), 8351-8356
source code          Pascal
sw requirements      Turbo Pascal
hw requirements      -

filename             EZ-FIT$.UUE
version              1.1
size                 170 k
compressed           PAK
ASCII conversion     UUE
author               Perella F. W.
description          Calculation of enzyme and receptor kinetics
literatur            Anal. Biochem. 174 (1989), 437-447
source code          -
sw requirements      -
hw requirements      CGA card

filename             GEL$.UUE
version              17.2.89
size                 50 k
compressed           PAK
ASCII conversion     UUE
author               Thompson J. R.
description          Calculation of DNA restriction fragment sizes
literatur            Anal. Biochem. 115 (81), 113-122
source code          Pascal
sw requirements      (Turbo Pascal for recompiling)
hw requirements      -

filename             HYDRASC$.UUE
version              1
size                 30 k
compressed           PAK
ASCII conversion     UUE
author               Penttila T. J.
description          Contour map for two polypeptide sequences.
                     Regions with similar hydropathic properties and second.
                     structure properties are plotted.
literatur            CABIOS, in prep.
source code          -
sw requirements      MATLAB-PC
hw requirements      Math. co-processor, >2M RAM

filename             MOTIF$.UUE
version              - (bug fix with plain ASCII sequences)
size                 45 k
compressed           PAK
ASCII conversion     UUE
author               Giles I.
description          Motif searching program
literatur            CABIOS 5 (1989), 227-232
source code          C
sw requirements      (Turbo C for recompiling)
hw requirements      -

filename             OLIGO.UUE
version              1.0
size                 105 k
compressed           PAK
ASCII conversion     UUE
author               Beadles K.
description          Oligo-directed single amino acid substitution
literatur            -
source code          -
sw requirements      -
hw requirements      -

filename             PATTERN$.UUE
version              -
size                 55 k
compressed           PAK
ASCII conversion     UUE
author               Giles I.
description          Pattern searching program
literatur            CABIOS 5 (1989), 227-232
source code          C
sw requirements      (Turbo C for recompiling)
hw requirements      -

filename             PCFOLD$.UUE
version              4.0
size                 160 k
compressed           PAK
ASCII conversion     UUE
author               Zuker M.
description          RNA folding
literatur            Meth. Enzymology 180 (1989), 262-288
source code          Fortran, Asm
sw requirements      (Compiler for recompiling)
hw requirements      -

filename             PLASMID.UUE
version              1.1
size                 75 k
compressed           PAK
ASCII conversion     UUE
author               Lipsick J.
description          Plasmid drawing program (CGA card req.)
literatur            -
source code          Basic
sw requirements      (Quickbasic for recompiling)
hw requirements      CGA card

filename             SDSE.UAA
version              2.0
size                 185 k
compressed           PAK
ASCII conversion     UUE (split)
author               Oliver J. L.
description          Simulation of DNA sequence evolution (Part 1 of 2)
literatur            CABIOS 5 (1989), 47-50
source code          -
sw requirements      -
hw requirements      -

filename             SDSE.UAB
version              2.0
size                 50 k
compressed           PAK
ASCII conversion     UUE (split)
author               Oliver J. L.
description          Simulation of DNA sequence evolution (Part 2 of 2)
literatur            CABIOS 5 (1989), 47-50
source code          -
sw requirements      -
hw requirements      -

filename             SEQAIDFD.UAA
version              3.5
size                 185 k
compressed           PAK
ASCII conversion     UUE (split)
author               Roufa D.
description          DNA and protein sequence analysis package (Part 1 of 2)
literatur            -
source code          -
sw requirements      -
hw requirements      -

filename             SEQAIDFD.UAB
version              3.5
size                 185 k
compressed           PAK
ASCII conversion     UUE (split)
author               Roufa D.
description          DNA and protein sequence analysis package (Part 2 of 2)
literatur            -
source code          -
sw requirements      -
hw requirements      -

filename             SIGSEQ$.UUE
version              1.0
size                 60 k
compressed           PAK
ASCII conversion     UUE
author               Popowicz A.M.
description          Prediction of signal sequence cleavage site
literatur            CABIOS 4 (1988), 405-406
source code          C
sw requirements      (Compiler for recompiling)
hw requirements      -

filename             TDALIGN$.UUE
version              1.61
size                 120 k
compressed           PAK
ASCII conversion     UUE
author               Davison D. (Thompson K.)
description          Sequence alignment
literatur            -
source code          -
sw requirements      -
hw requirements      -

(b) Archiving/Decoding Software

filename             UUEMBL.UUE
version              -
size                 35 k
compressed           PAK
ASCII conversion     UUE
author               Fuchs R. (Dumas M.)
description          UUEncoded form of UUD uudecoder and UUE uuencoder
literatur            -
source code          C
sw requirements      -
hw requirements      -

filename             UUD.C
version              -
size                 20 k
compressed           no
ASCII conversion     no
author               Dumas M.
description          Source code for recommended uudecoder
literatur            -
source code          C
sw requirements      Turbo C
hw requirements      -

filename             UU