ftp sites, Re: DOS software

Gribskov, Michael gribskov at FCRFV1.NCIFCRF.GOV
Thu Mar 7 08:51:00 EST 1991


This is an updated version of the list I previously posted to bionews.  
I did not cross post it to bio-software because I thought there would be
a heavy overlap.  However, in response to the recent questions about 
DOS software, here is the most recent version.  In  addition to sites 
mentioned in other postings, I note that there is one other listing that 
meentions DOS, the NIC.FUNET site in Finland.  I hope this is helpful.
*     *     *     *     *     *     *     *     *     *     *     *     *     *

*     *     *     *     *     *     *     *     *     *     *     *     *     *
                     Molecular Biology FTP and Server List
                                 7 March 1991

                                Michael Gribskov
                              gribskov at ncifcrf.gov

           IF YOU REDISTRIBUTE THIS LIST, PLEASE PRESERVE THIS HEADER
-------------------------------------------------------------------------------
The address for each site is shown in the left column, with the numerical
intenet address below, if it was available.  This is followed by the mail
address of the responsible person, or an address for more information.  For
FTP sites, the directory containing the relevent material is shown in
parentheses if it is other than the default directory.  Note that the larger
FTP sites may have a great deal of material of general interest in addition 
to what is shown here. 

For bulletin boards, the subscription address is shown in the left 
column, and the address for actual message in parentheses in the center 
column.  

++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
		Software packages, databases, and smaller FTP sites
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
address						contents		
responsible person/more information
+-----------------------------------------------------------------------------
evolution.genetics.washington.edu 	PHYLIP phylogeny package v3.3
128.95.12.41

Joe Felsenstein*, joe at genetics.washington.edu
+-----------------------------------------------------------------------------
anthro.utah.edu.			PHYLIP phylogeny package v3.3
128.110.192.93				(officially sanctioned by author)

Alan Rogers, rogers at anthro.utah.edu
+------------------------------------------------------------------------------
frodo.mgh.harvard.edu			Codon usage tables for all major species
132.183.190.10	
( [.codon] )

Mike Cherry*, cherry at frodo.mgh.harvard.edu
+------------------------------------------------------------------------------
haywire.nmsu.edu			gm (gene modeler) package	
128.123.001.032

Chris Fields*, cfields at nmsu.edu
+------------------------------------------------------------------------------
lhc.nlm.nih.gov				AIMB (AI and mol.bio. 
130.14.1.128                                  researchers database)
(/pub/aimb-db)

Lawrence Hunter*, hunter at nlm.nih.gov
-------------------------------------------------------------------------------
mcclb0.med.nyu.edu			USENET genbank software			

Ross Smith, smith at mcclb0.med.nyu.edu
+------------------------------------------------------------------------------
ncifcrf.gov       			Delila sequence analysis system 
129.43.1.11				(150 programs)		
(/pub/delila)

Tom Schneider*, toms at ncifcrf.gov
+------------------------------------------------------------------------------
uvaarpa.virginia.edu  			FASTA database search			
(/public_access/fasta.shar) 		program

William Pearson*, wrp at virginia.edu
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
		Larger FTP sites
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
embl-heidelberg.de 			EMBL server
192.54.41.20                            EMBL (updated daily)
					SWISS-PROT (and updates), PDB
					DROMAP, ECD, ENZYME, EPD, LiMB, NGDD,
Rainer Fuchs				PROSITE, SEQANALREF, TFD. 
fuchs at embl.bitnet			PC, UNIX, Mac & VAX software
+------------------------------------------------------------------------------
flat.nig.ac.jp		
133.39.128.2				GenBank, EMBL, DDBJ, PIR, SWISS-PROT,
					GENPEPT, LiMB
	  				Software: FLAT DB search/retrieval 
						  program for UNIX
Sanzo Miyazawa
smiyazaw at flat.nig.ac.jp
+------------------------------------------------------------------------------
genbank.bio.net				Genbank server
134.172.1.160				Genbank db (quarterly)
(/Public)				Genbank updates (weekly & nightly)
					GENPEPT db & updates
					EMBL db & updates
                                        SWISS-PROT db (soon available)
                                        ALU, ENZYME, PROSITE, REBASE,
Dave Kristofferson, 			SEQANALREF. 
kristoff at genbank.bio.net 		software
consultant at genbank.bio.net     		On-line services
+------------------------------------------------------------------------------
iubio.bio.indiana.edu			IUBIO archive
129.79.1.101				Mac,VAX,Atari,DOS software
					DROMAP, EPD, LiMB, PROSITE, REBASE, 
Don Gilbert,                            TFD 
gilbertd at iubio.bio.indiana.edu		Phylip
					Authorin program
-------------------------------------------------------------------------------
mbcrr.harvard.edu			Molecular Biology Computer 		
134.174.51.4				Research Resource
					software
Temple Smith,				PLSEARCH pattern db 
tsmith at mbcrr.harvard.edu 		MASE 3.1 multiple sequence editor
+------------------------------------------------------------------------------
menudo.uh.edu				U Houston archive
129.7.1.6				Genbank sequence db
					PIR sequence db
Dan Davison, 				UNIX,DOS,VMS,Mac software
dbd at theory.bchs.uh.edu 			Cray software (future)
					BioMatrix archive
					Molecular evolution bb archive
+------------------------------------------------------------------------------
modl.unibas.ch				Biocomputing server
131.152.1.2				Biozentrum, Universitaet Basel
 
(/biology/EMBnet)			EMBL ( updated daily)
 
(/biology/databases)			ALU, DROMAP, ECD, ENZYME, EPD, LiMB,
                                        NGDD, PROSITE, REBASE, SEQANALREF,
			                TFD.
					GCG (3) format codon usage tables

Reinhard Doelz,				BIOSCI Journal tables of contents
doelz at urz.unibas.ch			Amos Bairoch*, bairoch at cgecmu51.bitnet
+------------------------------------------------------------------------------
ncbi.nlm.nih.gov			Natl. Center for Biotech. Information
130.14.20.1				NCBI software

					Geninfo db documentation		
Scott Federhen,
federhen at ncbi.nlm.nih.gov		(help and information)
 
(/repository)				ENZYME, EPD, LiMB, NGDD, PROSITE,
                                        REBASE, SEQANALREF, TFD
					metabolism, mol-model
 
(/toolbox)				assorted public domain software
(/pub)					more software - BLAST, FASTA, MACAW, etc
 
(/pub/aimb-db)				AIMB db
					Lawrence Hunter*, hunter at nlm.nih.gov
+------------------------------------------------------------------------------
nic.funet.fi                            Finnish State Supercomputer Center
128.214.6.100                           Center for Scientific Computing
(pub/sci/molbio)                        VAX, Unix, DOS, Mac software
                                        many non-biological applications
Rob Harper, harper at csc.fi
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
		Server sites
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
bioserve%genome at lanl.gov (2)		Los Alamos National Laboratory server
					Genbank documentation			
Michael Cinofsky,			software archive (future)
michael%domain at lanl.gov	
-------------------------------------------------------------------------------
fileserv at gunbrf.bitnet (2)		PIR server				
					PIR, NBRF Nucleic, Genbank, EMBL 

Dr. John S. Garavelli, garavell at gunbrf.bitnet		
Ms. Kathryn Sidman,   pirmail at gunbrf.bitnet
+------------------------------------------------------------------------------
gene-server at bchs.uh.edu (1)		U Houston gene server			
					Genbank sequence db
gene-server-management at bchs.uh.edu	PIR sequence db
					UNIX,DOS,VMS,Mac software
					Cray software (future)
					BioMatrix archive
					Molecular evolution bb archive
					FASTA searches
-------------------------------------------------------------------------------
listserv at irlearn.bitnet (2)		IRLEARN list server			
					BIOSCI newsgroups & archives

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