mangalam at SALK-SGI.SDSC.EDU
Tue May 19 18:32:24 EST 1992
I am trying to use GDE 2.0 and am having some problems getting
the Restriction enzyme part to run.
The program has been installed on a SUN SS2 and I am running it
over ethernet as an X job displayed on an IRIS 4D (IRIX 4.0.1).
'Out of the box' GDE has only a few restriction enzymes in the
default file, so I downloaded and reformatted Rich Roberts commercial
enzyme list for it (ie recognition site <tab> <tab> RE name).
As I mentioned above, I can not get any output from the
restriction part of GDE. I also tried using the default set of
enzymes with no visible results but a series of core dumps.
The program can read in my sequence and display it in the 4 colors,
but ... no maps, no change in hilites.... Any ideas?
Harry Mangalam Vox:(619) 453-4100, x250
Dept of Biocomputing Fax:(619) 552-1546
The Salk Institute mangalam at salk-sc2.sdsc.edu
10010 N Torrey Pines Rd mangalam at salk-sgi.sdsc.edu
La Jolla CA 92037 mangalam at salk.bitnet
More information about the Bio-soft