Program for alignment with "boxes" ?

khofmann at biomed.biolan.uni-koeln.de khofmann at biomed.biolan.uni-koeln.de
Mon Nov 23 05:42:24 EST 1992


In article <1992Nov21.120846.17648 at gserv1.dl.ac.uk>, Roman.Jerala at IJS.si writes:
>Hallo netters, 
>does anybody know of a program which, when given as input alignment of several 
>sequences, adds boxes around aminoacids when more than ?% are equal (as you can
>often see in publcations). I would prefer version for PC or SGI and ftp-able 
>programs.

You could try BOXSHADE. It is available by FTP from
BIOMED.BIOLAN.UNI-KOELN.DE and a couple of other ftp-servers.
There are versions for VAX/VMS and for MSDOS.

Best Regards,
               Kay




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