displaying alignments

bionet bionet%frcgm51.earn at earn-relay.ac.uk
Tue Dec 21 13:26:25 EST 1993


>
>I am looking for a program which will allow me to display/print the
>alignment I have made of a set of protein sequences. Ideally, it will
>shade, or otherwise highlight, the residues that match a consensus,
>allowing for conservative replacements; it would be nice to
>distinguish highly conserved from less conserved residues.
>

Try MALIGNED, also available from EMBL. I like it. Can import plain GCG or
LINEUP files but, unfortunately, not CLUSTAL files.

Good luck,

Jean-Loup

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