GenPept Release 77.0 available via anonymous ftp

Mark A. Gunnell GUNNELL at FCRFV2.NCIFCRF.GOV
Tue Jun 15 10:52:19 EST 1993


Subject:   GenPept Release 77.0 flat file format available via anonymous ftp
From:      fconvx.ncifcrf.gov
Directory: pub/genpept
Files:     gprel77.txt.Z, gpdat77.seq.Z
Rel. Date: 15-June-1993

     This is to announce the availability release 77.0 of the GenPept(R) 
(GenBank Gene Products) Database.  GenPept is provided in a format similar 
to that formerly distributed by GenBank(R) under the administration of 
Intelligenetics Inc.  The last official full release of GenPept was in June,
1992 (Release 72.0), with incremental releases made available via ftp from 
ncbi.nlm.nih.gov.  NCBI also continues to provide a GenPept datafile pre-
formatted for use with the Pearson & Lipman Fasta program.  This GenPept 
release IS _NOT_ AN OFFICIAL RELEASE FROM THE NCBI-GENBANK, but an attempt to 
provide a data file compatible with other existing software products.  An 
example entry is shown below:

-------------------------------------------------------------------------------
LOCUS       A7NIFH_1
DEFINITION  Cyanobacteria anabaena 7120 nifH gene (nitrogenase reductase).
            NifH reading frame.
DATE        08-SEP-1990
ACCESSION   V00001
ORGANISM    Anabaena 7120 Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria;
            Cyanobacteria; Nostocales; Nostocaceae.
COMMENT     Nucleic Acid Features translated to generate this entry:
            CDS 195..1091 /note="nifH reading frame" /codon_start=1 
WEIGHT      32814.20
LENGTH      299
ORIGIN      Translated using phase 1
        1 MTDENIRQIA FYGKGGIGKS TTSQNTLAAM AEMGQRIMIV GCDPKADSTR LMLHSKAQTT
       61 VLHLAAERGA VEDLELHEVM LTGFRGVKCV ESGGPEPGVG CAGRGIITAI NFLEENGAYQ
      121 DLDFVSYDVL GDVVCGGFAM PIREGKAQEI YIVTSGEMMA MYAANNIARG ILKYAHSGGV
      181 RLGGLICNSR KVDREDELIM NLAERLNTQM IHFVPRDNIV QHAELRRMTV NEYAPDSNQG
      241 QEYRALAKKI NNDKLTIPTP MEMDELEALK IEYGLLDDDT KHSEIIGKPA EATNRSCRN
//
-------------------------------------------------------------------------------
                Sample entry from GenPept flat file.

This format of the data is suitable as an input data file for the GCG
program GenBankToGCG/GENPEPT.  Compatibility with other software has not
been tested.

If you have questions or comments concerning this data file, please contact:
-------------------------------------------------------------------------------
Mark A. Gunnell                   | Internet: gunnell at ncifcrf.gov
Sci. Applications Analyst         | Bitnet:   gunnell%ncifcrf.gov at cunyvm.bitnet
Biomedical Supercomputer Center   | Phone:   (301) 846-5779
PRI/DynCorp                       |
NCI-FCRDC                         |
PO Box B, Bldg 430                |
Frederick, MD 21702-1201  USA     |
===============================================================================

GenPept (R) is a registered trademark of the U.S. Department of Health and
Human Services for the GenBank Gene Products Data Bank.

GenBank (R) is a registered trademark of the U.S. Department of Health and
Human Services for the Genetic Sequence Data Bank.




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