RNA fingerprint program question

Bruce Roe broe at aardvark.ucs.uoknor.edu
Sun Mar 7 08:52:00 EST 1993


Hi all,
        I've got someone who is doing time-of-flight Mass Spec.
and would like to have a program that takes a know RNA sequence,
tRNA and/or rRNA, and produces an output containing:

        a. a list of the fragments obtained by RNAase T1 or RNAaseA
                digestion and
        b. the molecular weights of these fragments.

        Before she goes off and re-invents the wheel, does anyone
know of such a program?  I am aware of GCG's FINGERPRINT program
but it only lists the T1 fragments and does not give the mol. wts.
while the Staden NIP program gives di- and tri-nucleotide frequencies.

Thanks..........bruce
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 \  Bruce A. Roe               Professor of Chemistry and Biochemistry /
 /  University of Oklahoma     INTERNET: BROE at aardvark.ucs.uoknor.edu  \
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