Cluster Analysis

Mike Smith mikes at bioch.ox.ac.uk
Mon Oct 4 08:03:31 EST 1993


Dear Bionetters,

Does anybody know how one goes about dividing 100 structures (say) with the same
amino acid sequences into groups of similar structures.

The way I would envisage doing this would be to say that two structures are in
the same group if their rmsd (say) is less than 1 Angstrom, and that this
relationship is transitive, but this is only guessing!

Mike Smith




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