NCBI BLAST Output filters
Littlejohn Tim
little at ERE.UMontreal.CA
Tue Sep 14 14:27:12 EST 1993
Hi,
has anyone written any parsers for UNIX (shell scripts or C)
to filter the output of BLAST so that the following information
can be viewed on request:
- header information
- histogram (somtimes we want to see it and this decision is
best made after doing the search)
- Query, Database, one-line descriptions of the database
sequences that yielded one or more HSPs
- high-scoring segment pairs
- Parameters and/or Statistics
Thanks,
Tim
==============================================================================
E-mail: little at ere.umontreal.ca Tim Littlejohn
tim at bch.umontreal.ca
Snail Mail: Departement de biochimie Phone: (514) 343-6111, x5149
Universite de Montreal Fax: (514) 343-2210
C.P. 6128, succursale A,
Montreal (Quebec), H3C 3J7
CANADA
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