Software to Parse Feature Table

Christoph Gartmann GARTMANN at IMMUNBIO.MPG.DE
Wed Sep 15 18:21:28 EST 1993


In <CDEpLM.7vs at usenet.ucs.indiana.edu> wfischer at bio.indiana.edu writes:

> 
> I need to extract given pieces of sequence from a set of EMBL/GenBank
> entries, using ranges defined in the features table.  For example, I'd
> like to be able to extract, from a set of entries, the DNA sequence for
> each exon, or again for every complete CDS feature (all exons
> assembled).
> 
> Surely not everyone does this manually?
> 
> What software exists that can actually parse the (eminently parsible)
> joint features table format?  Please post reviews of programs you have
> used, or mail me directly and I will summarize.
> 

With Thure Etzold's SRS this can be done very easily.

Regards
  Christoph Gartmann


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