Secondary Structures from 3-D coordinates

flo at UNIXG.UBC.CA flo at UNIXG.UBC.CA
Mon Sep 20 22:19:41 EST 1993


Dear Netters;

Does anyone know of a program that takes 3-D coordinates of a protein,
interprets secondary structures present, and outputs a linear secondary
structure assignment underneath the primary sequence ?

I would like to be able to compare predicted secondary structures (e.g.
PredProtein server) with known secondary structure(s) of other protein(s)
in a given family.

I will summarize replies - Thanks in advance,


Roger Graham
UBC Microbiology
Vancouver
flo at unixg.ubc.ca





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