Sequence Alignment and Primer Design Softwares?

Chris Zarow zarow at molbio.usc.edu
Fri Apr 29 19:58:28 EST 1994



I am seeking recommendations for some software programs. 

1.   A sequence alignment program for cDNAs.   The sequence alignment program
should be able to align several sequences at once, and report on both 
homologous and non-homologous regions across sequences.  

2.   A primer-design program able to adhere to criteria for Tm, %GC, 
lack of primer-dimers, lack of hairpin loops, etc.

I welcome suggestions for programs available on the Internet, 
shareware programs, public domain programs, or reasonably priced 
commercial programs.

-- 
Chris Zarow, Ph.D
University of Southern California
Rancho Los Amigos Medical Center
zarow at molbio.usc.edu




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