extracting from genbank

Henrik Nielsen hnielsen at rna
Tue Aug 30 06:57:43 EST 1994

Shyang-Wen Lin (lin at cs.umd.edu) wrote:
: I need a tool to extract just the real  sequence parts of  the genbank from
: genbank files. No heading,  just the acgt parts.  Any one got  a tool to do
: this ? A small UNIX based program, a script ( awk, peril, etc) or a filter
: ?

The program fromgb in the FASTA package does this.
(available for anonymous ftp from ftp.virginia.edu in pub/fasta, see posting
from William R. Pearson in this group recently).


Henrik Nielsen

Center for Biological Sequence Analysis (CBS)
Department of Physical Chemistry (FKI)
The Technical University of Denmark (DTU)
Building 206
DK-2800 Lyngby, Denmark

phone: +45 4288 2222 ext. 2470 (operator)
phone: +45 4593 1222 ext. 2470 (tone)
  fax: +45 4593 4808
e-mail: hnielsen at cbs.dth.dk

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