extracting from genbank

Henrik Nielsen hnielsen at rna
Tue Aug 30 06:57:43 EST 1994


Shyang-Wen Lin (lin at cs.umd.edu) wrote:
: I need a tool to extract just the real  sequence parts of  the genbank from
: genbank files. No heading,  just the acgt parts.  Any one got  a tool to do
: this ? A small UNIX based program, a script ( awk, peril, etc) or a filter
: ?

The program fromgb in the FASTA package does this.
(available for anonymous ftp from ftp.virginia.edu in pub/fasta, see posting
from William R. Pearson in this group recently).


--

Henrik Nielsen

Center for Biological Sequence Analysis (CBS)
Department of Physical Chemistry (FKI)
The Technical University of Denmark (DTU)
Building 206
DK-2800 Lyngby, Denmark

phone: +45 4288 2222 ext. 2470 (operator)
phone: +45 4593 1222 ext. 2470 (tone)
  fax: +45 4593 4808
e-mail: hnielsen at cbs.dth.dk





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