Primer design with GCG
plewniak at titus.u-strasbg.fr
Fri Jan 14 03:57:30 EST 1994
>I am designing primers for PCR to amplify a region in the p24 regio of
>the HIV Gag protein. Is there a program in GCG that will
>allow me to test my primers against known HIV sequences to make sure I
>will not be amplifying other regions of the virus?
There is nothing specific in GCG right now but I think that searching the
database sequences GE:HIV* (HIV sequences in GenEmbl) with FASTA for homology
to your primers might be worth trying if there isn't anything better at hand...
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