searching patterns including sek. structures

Gunther Häß HAESS at IMMUNBIO.MPG.DE
Tue Oct 4 07:05:23 EST 1994


Hi netters

I'm searching for an amino-acid pattern searching program that includes 
the secondary structere in the pattern. It should be able to find, 
for example, a pattern of amino-acid on one side of an alpha helix
or in an angle of 90 degrees in the horizontal cut around one special 
amino-acid.
Does anybody know about a program which could perform such things?

Please answer to 

haess at immunbio.mpg.de




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