searching patterns including sek. structures

Steve & Rowan Gardner steve at gardner.demon.co.uk
Mon Oct 10 13:37:07 EST 1994


In article: <1994Oct4.130524.146 at immunbio.mpg.de>  HAESS at IMMUNBIO.MPG.DE (Gunther H) writes:
> 
> Hi netters
> 
> I'm searching for an amino-acid pattern searching program that includes 
> the secondary structere in the pattern. It should be able to find, 
> for example, a pattern of amino-acid on one side of an alpha helix
> or in an angle of 90 degrees in the horizontal cut around one special 
> amino-acid.
> Does anybody know about a program which could perform such things?
> 
> Please answer to 
> 
> haess at immunbio.mpg.de
> 
> 

One package that will do the query above is Iditis.  Iditis is a relational 
database of protein structure containing 500 fields of protein structure
data derived from the PDB.  The database can be queried using a graphical
interface.  Iditis was written (by myself) in Prof. Janet Thornton's lab
and is now distributed through Oxford Molecular.

----------------------------------------------------------------
Steve Gardner

steve at gardner.demon.co.uk





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