Help with PROTML program in PHYLIP package?
tim at megasun.BCH.UMontreal.CA
Mon Oct 24 22:17:28 EST 1994
In article <38grob$h6m at lyra.csx.cam.ac.uk> bcek1 at mole.bio.cam.ac.uk (Bernard Khoo) writes:
>I've recently been using the PHYLIP package (v 3.5) to construct trees
>based on protein sequence divergences, and the PROTML program seems to
>be the ticket.
>However, I've had problems getting it to run on my SGI (IRIX 5.0)
>system. From what I can make out of the source code (I taught myself
>small amounts of PASCAL a long, long time ago) it seems to require an
>input file called 'seqdata'; however, when I run the program it doesn't
>seem to be able to read in this file.
This is the case only for the older pascal version.
>Does anybody have any experience in getting this program to run under
Yes, with SunOS- the program has been completely rewritten in C, and
the new version of the package (called molphy) can be obtained by gopher.
or by anonymous ftp to sunmh.ism.ac.jp (188.8.131.52)
and look in /pub for the molphy files.
I also have a SunOS executable at the gopher site listed above.
I hope this helps,
E-mail: tim at bch.umontreal.ca
Snail Mail: Departement de biochimie Phone: (514) 343-6111, x5149
Universite de Montreal Fax: (514) 343-2210
C.P. 6128, Centre-ville
Montreal (Quebec), H3C 3J7
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