Protein Secondary Structure Analysis

Clemens Vonrhein vonrhein at bio5.chemie.uni-freiburg.de
Fri Sep 16 03:52:22 EST 1994


In article <1994Sep13.153554.18325 at Princeton.EDU>, micky at berthaw.princeton.edu (Michael West) writes:
|> Does anyone know of a program which will read a protein's pdb file, and then
|> make secondary structure assignments to each amino acid?  Any suggestions or
|> information would be appreciated.  Thanks.
|> 
|> Michael			micky at berthaw.princeton.edu

Despite from RASMOL and DSSP, you can use PROCHECK (should be at the PDB
ftp-server ). This does a lot of analysis of your PDB file as well as
secondary structure assignment. It produces Postscript plots of all
analysis as well as normal log-files.

Clemens
-- 
*****************************************************************
* Clemens Vonrhein   email:vonrhein at bio5.chemie.uni-freiburg.de *
*								*
*       Institut f"ur Organische Chemie				*
*         und Biochemie						*
*       Abt. Prof. G.E.Schulz					*
*       Albertstr.21						*	
* D-79104 Freiburg i.Br., Germany				*
*****************************************************************




More information about the Bio-soft mailing list