Nearest Neightbor Analysis

[Joe Felsenstein]

In article <gosink-0108951630150001 at microb3.biostat.washington.edu>,
John Gosink <gosink at u.washington.edu> wrote:
>In article <bmecham-3007952127390001 at 128.252.206.226>,
>bmecham at cellbio.wustl.edu (Robert Mecham) wrote:
>
>> Can anyone recommend a Mac program for doing nearest neighbor analysis
>> from a protein sequence?
>
>Try Joe Felsenstein's PHYLIP package.

Nope, sorry, PHYLIP doesn't do anything like nearest neighbor analysis,
assuming that by that you mean analysis of neighboring positions in the
sequence.  Mecham was not, I think, asking about phylogenies.

-----
Joe Felsenstein         joe at genetics.washington.edu     (IP No. 128.95.12.41)
 Dept. of Genetics, Univ. of Washington, Box 357360, Seattle, WA 98195-7360