Emacs mode for alignments?

Mark Gerstein mbg at scrub-ja.stanford.edu
Tue Aug 22 15:22:57 EST 1995


> Emacs mode for alignments?
> Can anyone point me towards one?  For doing protein and nucleic acid
> alignments.

I have a variety of very simple emacs macros for colouring a sequence
alignment according to various properties -- e.g.  hydrophobicity.
They are contained in my .emacs file, which available from
http://hyper.stanford.edu/~mbg. The colouring scheme is based on
highlight19 and is meant to be easily modified depending on your
taste. I would be most interested in hearing about an improvements on
this.

                                            Mark Gerstein

                                            mbg at hyper.stanford.edu
                                         http://hyper.stanford.edu/~mbg





More information about the Bio-soft mailing list