amino acid alignments

[Andrew Martin]

ae at dna.bio.warwick.ac.uk wrote:
: Does anyone know of a program that can identify amino acids with similar 
: properties (e.g. charge, hydrophobicity) in a multiple sequence alignment and 
: then highlight these residues for presentation in a table?
: Andrew Holmes
: University of Warwick
: xw at dna.bio.warwick.ac.uk

As a commercial offering, Cameleon from Oxford Molecular is pretty good
for this sort of thing. There's a link to their WWW page via my home page.

Best wishes,

Andrew

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Dr. Andrew C.R. Martin,         University College London & SciTech Software
EMAIL: martin at biochem.ucl.ac.uk                Tel:(Work) +44(0)171 419 3284
URL: http://www.biochem.ucl.ac.uk/~martin          (Home) +44(0)1372 275775
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