amino acid alignments

Andrew Martin martin at
Wed Aug 23 14:26:47 EST 1995

ae at wrote:
: Does anyone know of a program that can identify amino acids with similar 
: properties (e.g. charge, hydrophobicity) in a multiple sequence alignment and 
: then highlight these residues for presentation in a table?
: Andrew Holmes
: University of Warwick
: xw at

As a commercial offering, Cameleon from Oxford Molecular is pretty good
for this sort of thing. There's a link to their WWW page via my home page.

Best wishes,


Dr. Andrew C.R. Martin,         University College London & SciTech Software
EMAIL: martin at                Tel:(Work) +44(0)171 419 3284
URL:          (Home) +44(0)1372 275775

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