Synonymous/non-syn base changes

zharkikh at HGC6.SPH.UTH.TMC.EDU zharkikh at HGC6.SPH.UTH.TMC.EDU
Thu Aug 24 08:28:33 EST 1995


Jon Clewley asks:

>Can anyone suggest a program to use to calculate synonymous versus
>non-synonymous nucleotide changes?

you can find the program that calculates the above by using Li's (1993)
method at anonymous FTP:

    gsbs18.gs.uth.tmc.edu/pub/zharkikh/bootstrap

the program name is 

    matdisli

This is a version of the improved LWL program rewritten in C.

Andrey





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